C. lupus familiaris Gene: PRPF4 - ENSCAFG00000003224 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000003224
NamePRPF4
Descriptionpre-mRNA processing factor 4 [Source:HGNC Symbol;Acc:HGNC:17349]
OrganismCanis lupus familiaris (dog)
Synonym(s)hprp4, hprp4p, prp4, prp4p, snrnp60
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.48e3
  • 3.48e3
  • 5.34e3
84.43
  • 84.43
  • 76.11
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.72e3
  • 3.72e3
  • 7.97e3
  • 8.57e3
83.37
  • 83.37
  • 64.38
  • 61.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
4.20e3
  • 4.20e3
81.23
  • 81.23
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.27e3
  • 4.27e3
  • 6.07e3
80.92
  • 80.92
  • 72.87
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.57e3
  • 4.57e3
  • 6.59e3
79.57
  • 79.57
  • 70.52
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
4.63e3
  • 4.63e3
  • 5.83e3
79.32
  • 79.32
  • 73.95
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
4.86e3
  • 4.86e3
78.26
  • 78.26
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
5.00e3
  • 5.00e3
77.67
  • 77.67
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
5.16e3
  • 5.16e3
76.93
  • 76.93
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
5.32e3
  • 5.32e3
  • 8.57e3
76.22
  • 76.22
  • 61.70
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.42e3
  • 5.42e3
  • 7.54e3
  • 7.91e3
75.78
  • 75.78
  • 66.30
  • 64.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.60e3
  • 5.60e3
  • 5.71e3
  • 5.72e3
74.98
  • 74.98
  • 74.45
  • 74.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
5.60e3
  • 5.60e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
5.64e3
  • 5.64e3
74.80
  • 74.80
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
5.72e3
  • 5.72e3
74.42
  • 74.42
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
5.82e3
  • 5.82e3
73.96
  • 73.96
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
5.83e3
  • 5.83e3
73.95
  • 73.95
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.87e3
  • 5.87e3
  • 7.95e3
73.75
  • 73.75
  • 64.46
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.91e3
  • 5.91e3
  • 7.92e3
73.56
  • 73.56
  • 64.59
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
5.93e3
  • 5.93e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
5.94e3
  • 5.94e3
73.43
  • 73.43
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
5.95e3
  • 5.95e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.03e3
  • 6.03e3
  • 6.86e3
  • 7.01e3
  • 7.87e3
  • 7.91e3
73.02
  • 73.02
  • 69.33
  • 68.67
  • 64.81
  • 64.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
6.11e3
  • 6.11e3
72.70
  • 72.70
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
6.17e3
  • 6.17e3
72.39
  • 72.39
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.27e3
  • 6.27e3
  • 7.67e3
71.99
  • 71.99
  • 65.71
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
6.36e3
  • 6.36e3
71.55
  • 71.55
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
6.40e3
  • 6.40e3
  • 7.79e3
71.40
  • 71.40
  • 65.15
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
6.41e3
  • 6.41e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
6.47e3
  • 6.47e3
71.06
  • 71.06
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
6.61e3
  • 6.61e3
70.44
  • 70.44
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
  • 7.17e3
70.27
  • 70.27
  • 67.96
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
6.66e3
  • 6.66e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.72e3
  • 6.72e3
  • 6.95e3
69.94
  • 69.94
  • 68.94
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.73e3
  • 6.73e3
  • 7.70e3
69.90
  • 69.90
  • 65.57
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
6.85e3
  • 6.85e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
7.19e3
  • 7.19e3
67.86
  • 67.86
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
7.25e3
  • 7.25e3
67.56
  • 67.56
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.34e3
  • 7.34e3
  • 8.07e3
67.19
  • 67.19
  • 63.93
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
7.35e3
  • 7.35e3
67.13
  • 67.13
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
7.41e3
  • 7.41e3
66.88
  • 66.88
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
7.46e3
  • 7.46e3
66.63
  • 66.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
7.54e3
  • 7.54e3
66.28
  • 66.28
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
7.65e3
  • 7.65e3
65.81
  • 65.81
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
7.86e3
  • 7.86e3
64.85
  • 64.85
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
7.97e3
  • 7.97e3
64.35
  • 64.35
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
8.05e3
  • 8.05e3
63.99
  • 63.99
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
8.17e3
  • 8.17e3
63.47
  • 63.47
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
8.29e3
  • 8.29e3
62.92
  • 62.92
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
8.40e3
  • 8.40e3
62.46
  • 62.46
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.46e3
  • 8.46e3
  • 8.55e3
62.18
  • 62.18
  • 61.75
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
8.48e3
  • 8.48e3
62.09
  • 62.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.49e3
  • 8.49e3
62.04
  • 62.04
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.67e3
  • 8.67e3
61.22
  • 61.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000003224.

Cross-references

EnsemblENSCAFG00000003224 (PRPF4)
HGNCHGNC:17349 (PRPF4)
EMBLAAEX03008082
Uniprot/SPTREMBLF1PZB0, F1PZB0_CANLF

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