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C. lupus familiaris Gene: CLCN1 - ENSCAFG00000003619 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000003619
NameCLCN1
Descriptionchloride channel, voltage-sensitive 1 [Source:HGNC Symbol;Acc:HGNC:2019]
OrganismCanis lupus familiaris (dog)
Synonym(s)clc-1, clc1
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
3.19e3
  • 3.19e3
85.75
  • 85.75
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.96e3
  • 3.96e3
  • 4.84e3
82.28
  • 82.28
  • 78.35
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
3.98e3
  • 3.98e3
82.21
  • 82.21
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.99e3
  • 6.99e3
  • 1.35e4
68.73
  • 68.73
  • 39.74
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
7.87e3
  • 7.87e3
64.82
  • 64.82
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
8.67e3
  • 8.67e3
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
9.30e3
  • 9.30e3
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.01e4
  • 1.01e4
54.91
  • 54.91
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.03e4
  • 1.03e4
  • 1.07e4
53.79
  • 53.79
  • 52.05
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.07e4
  • 1.07e4
52.36
  • 52.36
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
47.72
  • 47.72
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
46.81
  • 46.81
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
46.21
  • 46.21
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
42.60
  • 42.60
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.36e4
  • 1.36e4
39.15
  • 39.15
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
39.11
  • 39.11
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.36e4
  • 1.36e4
  • 1.52e4
39.04
  • 39.04
  • 32.08
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.47e4
37.02
  • 37.02
  • 34.07
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.43e4
  • 1.43e4
  • 1.56e4
36.09
  • 36.09
  • 30.08
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.43e4
  • 1.43e4
  • 1.44e4
35.98
  • 35.98
  • 35.74
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.44e4
  • 1.44e4
35.82
  • 35.82
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.44e4
  • 1.44e4
  • 1.46e4
35.77
  • 35.77
  • 34.73
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
  • 1.59e4
  • 1.70e4
34.10
  • 34.10
  • 29.01
  • 23.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.10
  • 34.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.67e4
32.78
  • 32.78
  • 25.26
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.54e4
32.51
  • 32.51
  • 30.96
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.52e4
  • 1.52e4
32.13
  • 32.13
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.53e4
  • 1.53e4
31.78
  • 31.78
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.53e4
  • 1.53e4
31.48
  • 31.48
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
  • 1.56e4
  • 1.71e4
30.73
  • 30.73
  • 30.23
  • 23.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
  • 1.60e4
30.60
  • 30.60
  • 28.42
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.56e4
  • 1.56e4
30.46
  • 30.46
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 1.60e4
30.41
  • 30.41
  • 28.64
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
  • 1.62e4
30.12
  • 30.12
  • 27.36
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.62e4
29.94
  • 29.94
  • 27.63
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
29.89
  • 29.89
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
27.75
  • 27.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
27.67
  • 27.67
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
26.65
  • 26.65
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
  • 1.76e4
25.16
  • 25.16
  • 21.38
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000003619.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000003619.

Cross-references

EnsemblENSCAFG00000003619 (CLCN1)
HGNCHGNC:2019 (CLCN1)
EMBLAF162445
Uniprot/SWISSPROTCLCN1_CANLF, Q9MZT1

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