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C. lupus familiaris Gene: ITGB1 - ENSCAFG00000003821 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000003821
NameITGB1
Descriptionintegrin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6153]
OrganismCanis lupus familiaris (dog)
Synonym(s)cd29, fnrb, gpiia, mdf2, msk12
Orthologs(s)26 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000312keratinocyte
  • UBERON:0000104life cycle
334
  • 334
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
335
  • 335
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
388
  • 388
98.27
  • 98.27
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
436
  • 436
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
469
  • 469
  • 1.01e3
97.91
  • 97.91
  • 95.48
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
487
  • 487
97.83
  • 97.83
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
489
  • 489
  • 617
  • 1.03e3
97.82
  • 97.82
  • 97.24
  • 95.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
493
  • 493
  • 651
97.80
  • 97.80
  • 97.09
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
518
  • 518
  • 1.20e3
97.69
  • 97.69
  • 94.63
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
522
  • 522
  • 618
  • 683
97.67
  • 97.67
  • 97.24
  • 96.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
576
  • 576
  • 2.49e3
97.43
  • 97.43
  • 88.86
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
582
  • 582
  • 1.59e3
97.40
  • 97.40
  • 92.88
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
606
  • 606
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
608
  • 608
  • 901
97.29
  • 97.29
  • 95.98
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
625
  • 625
97.21
  • 97.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
628
  • 628
  • 2.22e3
97.19
  • 97.19
  • 90.07
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
643
  • 643
  • 2.09e3
97.13
  • 97.13
  • 90.65
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
643
  • 643
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
644
  • 644
  • 1.49e3
97.12
  • 97.12
  • 93.35
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
650
  • 650
97.10
  • 97.10
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
666
  • 666
  • 682
97.03
  • 97.03
  • 96.95
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
699
  • 699
96.88
  • 96.88
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
844
  • 844
  • 1.07e3
96.23
  • 96.23
  • 95.22
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
849
  • 849
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
930
  • 930
95.85
  • 95.85
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
937
  • 937
  • 2.14e3
  • 5.14e3
95.81
  • 95.81
  • 90.43
  • 77.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
995
  • 995
95.55
  • 95.55
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.01e3
  • 1.01e3
  • 1.47e3
95.47
  • 95.47
  • 93.45
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.07e3
  • 1.07e3
95.22
  • 95.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.13e3
  • 1.13e3
  • 1.67e3
  • 1.83e3
  • 3.10e3
  • 3.67e3
94.97
  • 94.97
  • 92.55
  • 91.81
  • 86.13
  • 83.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.13e3
  • 1.13e3
94.96
  • 94.96
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.27e3
  • 1.27e3
94.34
  • 94.34
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.28e3
  • 1.28e3
94.30
  • 94.30
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.29e3
  • 1.29e3
94.25
  • 94.25
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.29e3
  • 1.29e3
94.23
  • 94.23
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.31e3
  • 1.31e3
94.15
  • 94.15
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.39e3
  • 1.39e3
93.79
  • 93.79
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.58e3
  • 1.58e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.77e3
  • 1.77e3
92.10
  • 92.10
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.78e3
  • 1.78e3
  • 2.78e3
92.05
  • 92.05
  • 87.57
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.03e3
  • 2.03e3
90.94
  • 90.94
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
2.61e3
  • 2.61e3
88.35
  • 88.35
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
2.72e3
  • 2.72e3
87.85
  • 87.85
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.97e3
  • 2.97e3
86.74
  • 86.74
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.34e3
  • 3.34e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.44e3
  • 3.44e3
84.61
  • 84.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.04e3
  • 4.04e3
  • 4.34e3
81.96
  • 81.96
  • 80.58
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
4.28e3
  • 4.28e3
80.85
  • 80.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
4.65e3
  • 4.65e3
79.20
  • 79.20
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.88e3
  • 4.88e3
78.20
  • 78.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
5.90e3
  • 5.90e3
73.61
  • 73.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
6.54e3
  • 6.54e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
8.73e3
  • 8.73e3
60.94
  • 60.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000003821.

Paralogs (same species)

Cross-references

EnsemblENSCAFG00000003821 (ITGB1)
HGNCHGNC:6153 (ITGB1)
EMBLAAEX03001154
Uniprot/SPTREMBLE2RT60, E2RT60_CANLF

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