C. lupus familiaris Gene: SDC1 - ENSCAFG00000003833 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000003833
NameSDC1
Descriptionsyndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
OrganismCanis lupus familiaris (dog)
Synonym(s)cd138, sdc, synd1, syndecan

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
209
  • 209
99.06860
  • 99.06860
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
263
  • 263
98.82599
  • 98.82599
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
467
  • 467
97.91331
  • 97.91331
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
515
  • 515
97.69658
  • 97.69658
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
824
  • 824
96.31471
  • 96.31471
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
828
  • 828
  • 851
  • 1.03e3
  • 3.18e3
96.29599
  • 96.29599
  • 96.19380
  • 95.38331
  • 85.78533
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.04e3
  • 1.04e3
  • 1.47e4
95.36987
  • 95.36987
  • 34.14876
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.09e3
  • 1.09e3
  • 5.59e3
95.11463
  • 95.11463
  • 74.97761
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
1.54e3
  • 1.54e3
  • 2.39e3
  • 5.31e3
93.11302
  • 93.11302
  • 89.32026
  • 76.23710
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.56e3
  • 1.56e3
  • 3.40e3
93.01303
  • 93.01303
  • 84.76178
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.74e3
  • 1.74e3
92.22398
  • 92.22398
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.94e3
  • 1.94e3
91.30396
  • 91.30396
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
2.51e3
  • 2.51e3
88.74709
  • 88.74709
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
2.70e3
  • 2.70e3
87.91420
  • 87.91420
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
2.83e3
  • 2.83e3
87.35447
  • 87.35447
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
2.85e3
  • 2.85e3
  • 5.52e3
87.26352
  • 87.26352
  • 75.29800
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.95e3
  • 2.95e3
  • 6.06e3
86.77682
  • 86.77682
  • 72.85062
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
3.72e3
  • 3.72e3
83.34677
  • 83.34677
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.27e3
  • 4.27e3
  • 4.36e3
80.90632
  • 80.90632
  • 80.46301
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.30e3
  • 4.30e3
  • 7.83e3
80.74512
  • 80.74512
  • 64.95164
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
4.46e3
  • 4.46e3
80.02530
  • 80.02530
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
5.35e3
  • 5.35e3
76.06126
  • 76.06126
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
5.52e3
  • 5.52e3
75.29106
  • 75.29106
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
6.17e3
  • 6.17e3
72.39387
  • 72.39387
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.22e3
  • 6.22e3
  • 7.55e3
72.17123
  • 72.17123
  • 66.20097
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
6.37e3
  • 6.37e3
71.50278
  • 71.50278
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
7.19e3
  • 7.19e3
67.81300
  • 67.81300
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
7.25e3
  • 7.25e3
67.54138
  • 67.54138
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.93e3
  • 7.93e3
  • 9.48e3
64.51728
  • 64.51728
  • 57.54044
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.31e3
  • 8.31e3
  • 1.03e4
62.79921
  • 62.79921
  • 53.99615
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
8.31e3
  • 8.31e3
62.79778
  • 62.79778
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
8.34e3
  • 8.34e3
62.66183
  • 62.66183
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
8.45e3
  • 8.45e3
62.17983
  • 62.17983
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
8.69e3
  • 8.69e3
61.08723
  • 61.08723
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
9.00e3
  • 9.00e3
  • 9.37e3
59.68892
  • 59.68892
  • 58.06914
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
9.72e3
  • 9.72e3
56.49292
  • 56.49292
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.12e4
  • 1.12e4
49.84775
  • 49.84775
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
48.76411
  • 48.76411
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
47.05356
  • 47.05356
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
45.45943
  • 45.45943
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
1.25e4
  • 1.25e4
44.23697
  • 44.23697
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
44.10263
  • 44.10263
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
43.35931
  • 43.35931
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
40.69497
  • 40.69497
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
38.21888
  • 38.21888
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
  • 1.43e4
37.74404
  • 37.74404
  • 36.05660
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.39e4
  • 1.39e4
37.66344
  • 37.66344
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.44e4
  • 1.44e4
35.69765
  • 35.69765
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.45e4
  • 1.45e4
35.14687
  • 35.14687
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.48e4
  • 1.48e4
33.51549
  • 33.51549
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
  • 1.55e4
32.06609
  • 32.06609
  • 30.63022
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAAEX03010759, AAEX03010760
EnsemblENSCAFG00000003833 (SDC1)
HGNCHGNC:10658 (SDC1)
Uniprot/SPTREMBLE2RT70, E2RT70_CANLF

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