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C. lupus familiaris Gene: LIN7B - ENSCAFG00000003834 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000003834
NameLIN7B
Descriptionlin-7 homolog B (C. elegans) [Source:HGNC Symbol;Acc:HGNC:17788]
OrganismCanis lupus familiaris (dog)
Synonym(s)lin-7b, mals-2, veli2
Orthologs(s)14 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
  • 1.51e3
94.12
  • 94.12
  • 93.25
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.41e3
  • 1.41e3
93.69
  • 93.69
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.60e3
  • 1.60e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.82e3
  • 1.82e3
91.85
  • 91.85
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
2.40e3
  • 2.40e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.64e3
  • 2.64e3
  • 1.05e4
88.22
  • 88.22
  • 53.10
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.65e3
  • 2.65e3
  • 3.77e3
88.18
  • 88.18
  • 83.13
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.71e3
  • 2.71e3
  • 1.03e4
87.89
  • 87.89
  • 54.01
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.10e3
  • 3.10e3
86.15
  • 86.15
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.21e3
  • 3.21e3
85.67
  • 85.67
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.28e3
  • 3.28e3
85.33
  • 85.33
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
3.82e3
  • 3.82e3
82.90
  • 82.90
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.98e3
  • 3.98e3
  • 5.58e3
82.23
  • 82.23
  • 75.06
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
3.98e3
  • 3.98e3
82.22
  • 82.22
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
4.24e3
  • 4.24e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.36e3
  • 4.36e3
  • 5.64e3
80.50
  • 80.50
  • 74.80
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.48e3
  • 4.48e3
  • 9.86e3
79.97
  • 79.97
  • 55.92
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.49e3
  • 4.49e3
  • 7.00e3
79.93
  • 79.93
  • 68.69
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
4.80e3
  • 4.80e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
4.81e3
  • 4.81e3
78.48
  • 78.48
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.82e3
  • 4.82e3
  • 4.85e3
78.44
  • 78.44
  • 78.31
AEIR
  • AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
4.90e3
  • 4.90e3
78.11
  • 78.11
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.97e3
  • 4.97e3
  • 5.72e3
  • 9.40e3
77.79
  • 77.79
  • 74.42
  • 57.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.03e3
  • 5.03e3
  • 6.33e3
77.50
  • 77.50
  • 71.71
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
5.20e3
  • 5.20e3
76.76
  • 76.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
5.36e3
  • 5.36e3
  • 9.84e3
76.02
  • 76.02
  • 56.02
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
6.55e3
  • 6.55e3
70.69
  • 70.69
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.73e3
  • 6.73e3
  • 8.27e3
69.89
  • 69.89
  • 63.02
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
6.95e3
  • 6.95e3
68.95
  • 68.95
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
7.08e3
  • 7.08e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
7.25e3
  • 7.25e3
67.56
  • 67.56
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
7.26e3
  • 7.26e3
  • 7.34e3
67.55
  • 67.55
  • 67.17
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
7.27e3
  • 7.27e3
67.49
  • 67.49
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
7.51e3
  • 7.51e3
66.40
  • 66.40
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
7.71e3
  • 7.71e3
65.53
  • 65.53
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
7.76e3
  • 7.76e3
65.29
  • 65.29
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.24e3
  • 8.24e3
  • 1.01e4
63.17
  • 63.17
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.25e3
  • 8.25e3
  • 9.66e3
  • 1.09e4
63.13
  • 63.13
  • 56.82
  • 51.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
8.28e3
  • 8.28e3
62.98
  • 62.98
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
8.28e3
  • 8.28e3
62.98
  • 62.98
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
8.59e3
  • 8.59e3
  • 8.96e3
  • 9.94e3
61.60
  • 61.60
  • 59.93
  • 55.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
8.59e3
  • 8.59e3
61.59
  • 61.59
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
8.65e3
  • 8.65e3
61.32
  • 61.32
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
8.78e3
  • 8.78e3
  • 9.56e3
60.76
  • 60.76
  • 57.26
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
8.83e3
  • 8.83e3
60.52
  • 60.52
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
9.21e3
  • 9.21e3
  • 1.05e4
58.82
  • 58.82
  • 53.24
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
9.31e3
  • 9.31e3
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
9.32e3
  • 9.32e3
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
9.49e3
  • 9.49e3
57.59
  • 57.59
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
9.51e3
  • 9.51e3
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.01e4
  • 1.01e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.02e4
  • 1.02e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
  • 1.17e4
  • 1.20e4
  • 1.26e4
  • 1.58e4
51.27
  • 51.27
  • 47.61
  • 46.43
  • 43.55
  • 29.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.12e4
  • 1.12e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000003834.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000003834.

Cross-references

EnsemblENSCAFG00000003834 (LIN7B)
HGNCHGNC:17788 (LIN7B)
EMBLAAEX03000805
Uniprot/SPTREMBLE2RT69, E2RT69_CANLF

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