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C. lupus familiaris Gene: LIG1 - ENSCAFG00000004046 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004046
NameLIG1
Descriptionligase I, DNA, ATP-dependent [Source:HGNC Symbol;Acc:HGNC:6598]
OrganismCanis lupus familiaris (dog)
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.72e3
  • 2.72e3
87.82
  • 87.82
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.75e3
  • 2.75e3
  • 9.27e3
  • 9.74e3
87.71
  • 87.71
  • 58.55
  • 56.44
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
3.44e3
  • 3.44e3
84.62
  • 84.62
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
3.46e3
  • 3.46e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.78e3
  • 3.78e3
  • 1.24e4
83.10
  • 83.10
  • 44.67
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
3.90e3
  • 3.90e3
82.55
  • 82.55
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
4.03e3
  • 4.03e3
  • 6.09e3
81.99
  • 81.99
  • 72.77
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
4.13e3
  • 4.13e3
81.52
  • 81.52
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
4.48e3
  • 4.48e3
  • 1.09e4
79.97
  • 79.97
  • 51.30
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.66e3
  • 4.66e3
  • 8.85e3
79.15
  • 79.15
  • 60.42
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.85e3
  • 4.85e3
  • 8.30e3
  • 8.83e3
  • 9.35e3
  • 9.74e3
78.33
  • 78.33
  • 62.88
  • 60.51
  • 58.21
  • 56.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.89e3
  • 4.89e3
78.15
  • 78.15
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
5.06e3
  • 5.06e3
77.39
  • 77.39
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
5.10e3
  • 5.10e3
77.21
  • 77.21
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
5.19e3
  • 5.19e3
  • 5.53e3
  • 7.92e3
76.79
  • 76.79
  • 75.28
  • 64.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.31e3
  • 5.31e3
  • 6.93e3
76.26
  • 76.26
  • 69.00
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
5.43e3
  • 5.43e3
75.70
  • 75.70
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
5.59e3
  • 5.59e3
75.01
  • 75.01
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
6.18e3
  • 6.18e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
6.23e3
  • 6.23e3
72.14
  • 72.14
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
6.65e3
  • 6.65e3
70.25
  • 70.25
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
6.76e3
  • 6.76e3
69.78
  • 69.78
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.91e3
  • 6.91e3
  • 8.09e3
69.09
  • 69.09
  • 63.83
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.92e3
  • 6.92e3
  • 7.12e3
69.06
  • 69.06
  • 68.16
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
6.93e3
  • 6.93e3
69.00
  • 69.00
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
7.11e3
  • 7.11e3
  • 8.67e3
68.23
  • 68.23
  • 61.22
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.83e3
  • 7.83e3
  • 9.69e3
64.98
  • 64.98
  • 56.67
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
7.98e3
  • 7.98e3
64.31
  • 64.31
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.98e3
  • 7.98e3
  • 8.78e3
64.30
  • 64.30
  • 60.76
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
8.00e3
  • 8.00e3
64.21
  • 64.21
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
8.07e3
  • 8.07e3
  • 1.04e4
63.93
  • 63.93
  • 53.50
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
8.22e3
  • 8.22e3
  • 8.45e3
63.24
  • 63.24
  • 62.24
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.22e3
  • 8.22e3
63.23
  • 63.23
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
8.27e3
  • 8.27e3
63.01
  • 63.01
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
8.36e3
  • 8.36e3
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
8.47e3
  • 8.47e3
62.13
  • 62.13
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
8.92e3
  • 8.92e3
60.12
  • 60.12
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
9.27e3
  • 9.27e3
58.55
  • 58.55
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.30e3
  • 9.30e3
  • 9.38e3
  • 9.47e3
58.40
  • 58.40
  • 58.06
  • 57.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
9.35e3
  • 9.35e3
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
9.63e3
  • 9.63e3
56.94
  • 56.94
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.74e3
  • 9.74e3
  • 1.01e4
56.45
  • 56.45
  • 55.00
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
9.82e3
  • 9.82e3
56.10
  • 56.10
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
9.90e3
  • 9.90e3
55.73
  • 55.73
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
9.92e3
  • 9.92e3
55.65
  • 55.65
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.95e3
  • 9.95e3
55.51
  • 55.51
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
9.97e3
  • 9.97e3
55.40
  • 55.40
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.02e4
  • 1.02e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.02e4
  • 1.02e4
54.35
  • 54.35
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.02e4
  • 1.02e4
  • 1.04e4
54.25
  • 54.25
  • 53.53
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
53.97
  • 53.97
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
52.97
  • 52.97
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.10e4
  • 1.10e4
50.88
  • 50.88
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.15e4
  • 1.15e4
48.75
  • 48.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species15 genesCompare expression
Mammalia14 species16 genesCompare expression
Amniota16 species18 genesCompare expression
Tetrapoda17 species19 genesCompare expression
Euteleostomi18 species20 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000004046.

Cross-references

EnsemblENSCAFG00000004046 (LIG1)
HGNCHGNC:6598 (LIG1)
EMBLAAEX03000828
Uniprot/SPTREMBLF6URE1, F6URE1_CANLF

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