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C. lupus familiaris Gene: HDAC2 - ENSCAFG00000004049 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004049
NameHDAC2
Descriptionhistone deacetylase 2 [Source:HGNC Symbol;Acc:HGNC:4853]
OrganismCanis lupus familiaris (dog)
Synonym(s)rpd3, yaf1
Orthologs(s)25 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
396
  • 396
  • 1.53e3
  • 1.80e3
98.23
  • 98.23
  • 93.17
  • 91.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
462
  • 462
  • 2.58e3
97.94
  • 97.94
  • 88.46
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
573
  • 573
  • 1.29e3
97.44
  • 97.44
  • 94.23
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
581
  • 581
97.41
  • 97.41
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
609
  • 609
  • 2.66e3
97.28
  • 97.28
  • 88.11
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
728
  • 728
96.75
  • 96.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
800
  • 800
  • 967
96.43
  • 96.43
  • 95.68
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
883
  • 883
  • 951
96.06
  • 96.06
  • 95.75
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
903
  • 903
95.97
  • 95.97
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
920
  • 920
95.89
  • 95.89
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
968
  • 968
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.08e3
  • 1.08e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.09e3
  • 1.09e3
95.13
  • 95.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.09e3
  • 1.09e3
  • 1.46e3
95.11
  • 95.11
  • 93.47
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.12e3
  • 1.12e3
  • 1.35e3
94.98
  • 94.98
  • 93.96
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.19e3
  • 1.19e3
94.70
  • 94.70
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.20e3
  • 1.20e3
94.62
  • 94.62
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.24e3
  • 1.24e3
  • 1.46e3
94.44
  • 94.44
  • 93.46
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.29e3
  • 1.29e3
  • 1.67e3
94.23
  • 94.23
  • 92.55
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.32e3
  • 1.32e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.33e3
  • 1.33e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.39e3
  • 1.39e3
93.77
  • 93.77
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.42e3
  • 1.42e3
  • 3.21e3
93.68
  • 93.68
  • 85.64
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.44e3
  • 1.44e3
93.57
  • 93.57
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.44e3
  • 1.44e3
93.56
  • 93.56
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.45e3
  • 1.45e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.46e3
  • 1.46e3
93.49
  • 93.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.47e3
  • 1.47e3
  • 2.43e3
  • 2.66e3
  • 3.72e3
  • 4.74e3
93.41
  • 93.41
  • 89.12
  • 88.12
  • 83.36
  • 78.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.51e3
  • 1.51e3
  • 1.68e3
93.27
  • 93.27
  • 92.51
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.53e3
  • 1.53e3
93.15
  • 93.15
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
93.13
  • 93.13
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.56e3
  • 1.56e3
93.04
  • 93.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.58e3
  • 1.58e3
  • 2.09e3
92.93
  • 92.93
  • 90.68
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.62e3
  • 1.62e3
  • 1.63e3
  • 1.70e3
92.78
  • 92.78
  • 92.74
  • 92.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.64e3
  • 1.64e3
  • 1.98e3
92.69
  • 92.69
  • 91.14
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.65e3
  • 1.65e3
  • 1.77e3
92.61
  • 92.61
  • 92.10
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.66e3
  • 1.66e3
  • 1.69e3
92.60
  • 92.60
  • 92.45
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.71e3
  • 1.71e3
92.36
  • 92.36
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.71e3
  • 1.71e3
92.34
  • 92.34
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.71e3
  • 1.71e3
92.34
  • 92.34
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.73e3
  • 1.73e3
  • 1.76e3
  • 3.24e3
92.26
  • 92.26
  • 92.13
  • 85.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.76e3
  • 1.76e3
92.13
  • 92.13
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.79e3
  • 1.79e3
91.99
  • 91.99
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.82e3
  • 1.82e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.87e3
  • 1.87e3
91.62
  • 91.62
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
2.00e3
  • 2.00e3
91.08
  • 91.08
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
2.02e3
  • 2.02e3
90.97
  • 90.97
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.02e3
  • 2.02e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
2.05e3
  • 2.05e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
2.44e3
  • 2.44e3
89.09
  • 89.09
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.44e3
  • 2.44e3
89.07
  • 89.07
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
5.46e3
  • 5.46e3
75.61
  • 75.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000004049.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000004049.

Cross-references

EnsemblENSCAFG00000004049 (HDAC2)
HGNCHGNC:4853 (HDAC2)
EMBLAAEX03008633
Uniprot/SPTREMBLF1PR63, F1PR63_CANLF, J9P9H5, J9P9H5_CANLF

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