C. lupus familiaris Gene: VSX1 - ENSCAFG00000004368 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004368
NameVSX1
Descriptionvisual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
OrganismCanis lupus familiaris (dog)
Synonym(s)ppcd, ppcd1, ppd
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.80e4
  • 1.80e4
19.29
  • 19.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000004368.

Cross-references

EnsemblENSCAFG00000004368 (VSX1)
HGNCHGNC:12723 (VSX1)
EMBLAAEX03013434
Uniprot/SPTREMBLE2RMI2, E2RMI2_CANLF

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