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C. lupus familiaris Gene: VIM - ENSCAFG00000004529 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004529
NameVIM
Descriptionvimentin [Source:HGNC Symbol;Acc:HGNC:12692]
OrganismCanis lupus familiaris (dog)
Orthologs(s)19 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
28.0
  • 28.0
99.88
  • 99.88
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
35.0
  • 35.0
99.85
  • 99.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
41.0
  • 41.0
  • 291
99.82
  • 99.82
  • 98.70
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
47.0
  • 47.0
  • 51.0
99.79
  • 99.79
  • 99.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
72.0
  • 72.0
  • 2.79e3
99.68
  • 99.68
  • 87.53
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
76.0
  • 76.0
99.66
  • 99.66
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
85.0
  • 85.0
99.62
  • 99.62
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
96.0
  • 96.0
  • 997
99.58
  • 99.58
  • 95.55
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
107
  • 107
99.53
  • 99.53
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
112
  • 112
99.50
  • 99.50
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
120
  • 120
  • 140
99.47
  • 99.47
  • 99.38
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
132
  • 132
  • 543
99.41
  • 99.41
  • 97.58
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
151
  • 151
  • 181
  • 186
99.33
  • 99.33
  • 99.20
  • 99.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
151
  • 151
99.33
  • 99.33
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
158
  • 158
  • 169
  • 282
99.30
  • 99.30
  • 99.25
  • 98.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
182
  • 182
  • 761
99.19
  • 99.19
  • 96.60
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
196
  • 196
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
203
  • 203
  • 616
99.09
  • 99.09
  • 97.25
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
284
  • 284
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
284
  • 284
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
328
  • 328
  • 1.27e3
98.54
  • 98.54
  • 94.31
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
338
  • 338
98.49
  • 98.49
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
343
  • 343
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
348
  • 348
98.45
  • 98.45
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
364
  • 364
98.38
  • 98.38
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
364
  • 364
98.37
  • 98.37
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
367
  • 367
  • 458
98.36
  • 98.36
  • 97.96
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
383
  • 383
  • 633
98.29
  • 98.29
  • 97.17
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
392
  • 392
98.25
  • 98.25
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
422
  • 422
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
435
  • 435
  • 868
98.06
  • 98.06
  • 96.12
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
448
  • 448
  • 532
  • 547
98.00
  • 98.00
  • 97.63
  • 97.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
453
  • 453
  • 563
97.98
  • 97.98
  • 97.49
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
520
  • 520
97.68
  • 97.68
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
520
  • 520
97.68
  • 97.68
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
542
  • 542
  • 1.81e3
97.58
  • 97.58
  • 91.90
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
606
  • 606
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
640
  • 640
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
730
  • 730
96.74
  • 96.74
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
913
  • 913
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.08e3
  • 1.08e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.21e3
  • 1.21e3
  • 3.92e3
94.57
  • 94.57
  • 82.49
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.22e3
  • 1.22e3
94.57
  • 94.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.29e3
  • 1.29e3
  • 1.36e3
  • 1.39e3
  • 1.44e3
  • 2.15e3
94.24
  • 94.24
  • 93.90
  • 93.80
  • 93.55
  • 90.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.63e3
  • 1.63e3
92.70
  • 92.70
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
91.14
  • 91.14
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.16e3
  • 2.16e3
  • 3.22e3
90.34
  • 90.34
  • 85.60
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
2.45e3
  • 2.45e3
89.05
  • 89.05
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.67e3
  • 2.67e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
2.99e3
  • 2.99e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.19e3
  • 3.19e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
3.53e3
  • 3.53e3
84.20
  • 84.20
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
5.02e3
  • 5.02e3
77.55
  • 77.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000004529.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000004529.

Cross-references

EnsemblENSCAFG00000004529 (VIM)
HGNCHGNC:12692 (VIM)
EMBLAAEX03001246
Uniprot/SPTREMBLF1PLS4, F1PLS4_CANLF

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