We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

C. lupus familiaris Gene: USH1G - ENSCAFG00000004654 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004654
NameUSH1G
DescriptionUsher syndrome 1G (autosomal recessive) [Source:HGNC Symbol;Acc:HGNC:16356]
OrganismCanis lupus familiaris (dog)
Synonym(s)anks4a, flj33924, sans
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.67e3
  • 5.67e3
  • 6.39e3
74.64
  • 74.64
  • 71.44
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
  • 1.60e4
47.27
  • 47.27
  • 28.53
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
43.28
  • 43.28
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
41.62
  • 41.62
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
40.59
  • 40.59
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
35.73
  • 35.73
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.44
  • 34.44
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
34.06
  • 34.06
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
  • 1.55e4
  • 1.56e4
33.53
  • 33.53
  • 30.72
  • 30.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
33.03
  • 33.03
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
29.06
  • 29.06
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.51
  • 28.51
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
  • 1.85e4
27.33
  • 27.33
  • 17.24
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
25.44
  • 25.44
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
25.41
  • 25.41
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
25.11
  • 25.11
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
24.01
  • 24.01
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.73e4
  • 1.73e4
22.61
  • 22.61
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
22.12
  • 22.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000004654.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000004654.

Cross-references

EnsemblENSCAFG00000004654 (USH1G)
HGNCHGNC:16356 (USH1G)
EMBLAAEX03006303, AAEX03006304
Uniprot/SPTREMBLF1PVU5, F1PVU5_CANLF

Do not show this banner again