C. lupus familiaris Gene: C1orf228 - ENSCAFG00000004790 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004790
NameC1orf228
Descriptionchromosome 1 open reading frame 228 [Source:HGNC Symbol;Acc:HGNC:34345]
OrganismCanis lupus familiaris (dog)
Synonym(s)mgc33556, ncrna00082, p40

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.89e3
  • 3.89e3
  • 5.99e3
82.57706
  • 82.57706
  • 73.19541
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.25e3
  • 4.25e3
  • 4.81e3
80.97349
  • 80.97349
  • 78.47913
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
4.52e3
  • 4.52e3
79.76446
  • 79.76446
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
7.15e3
  • 7.15e3
68.00107
  • 68.00107
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
8.01e3
  • 8.01e3
64.15046
  • 64.15046
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
8.30e3
  • 8.30e3
62.83360
  • 62.83360
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.44e3
  • 8.44e3
62.19470
  • 62.19470
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
8.47e3
  • 8.47e3
62.06363
  • 62.06363
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
8.63e3
  • 8.63e3
  • 9.50e3
  • 1.02e4
  • 1.06e4
61.34695
  • 61.34695
  • 57.47134
  • 54.22264
  • 52.58996
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
8.67e3
  • 8.67e3
61.17679
  • 61.17679
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
9.01e3
  • 9.01e3
59.68001
  • 59.68001
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
9.03e3
  • 9.03e3
  • 1.27e4
59.58499
  • 59.58499
  • 43.27714
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.26e3
  • 9.26e3
  • 1.11e4
58.52140
  • 58.52140
  • 50.19703
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
1.03e4
  • 1.03e4
  • 1.23e4
  • 1.25e4
54.10622
  • 54.10622
  • 44.70715
  • 44.21977
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
53.17755
  • 53.17755
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
52.67329
  • 52.67329
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.12e4
  • 1.12e4
49.98657
  • 49.98657
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.14e4
  • 1.14e4
49.00143
  • 49.00143
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
47.47895
  • 47.47895
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.20e4
  • 1.20e4
46.09529
  • 46.09529
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.21e4
  • 1.21e4
  • 1.38e4
45.77302
  • 45.77302
  • 38.00376
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
45.20419
  • 45.20419
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
42.64732
  • 42.64732
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.30e4
42.63389
  • 42.63389
  • 41.57711
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
  • 1.47e4
41.75622
  • 41.75622
  • 34.07550
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.33e4
  • 1.33e4
40.47107
  • 40.47107
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
39.82178
  • 39.82178
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
39.65610
  • 39.65610
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
1.36e4
  • 1.36e4
39.03815
  • 39.03815
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
38.95755
  • 38.95755
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.36e4
  • 1.36e4
38.95634
  • 38.95634
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.38e4
  • 1.38e4
38.16944
  • 38.16944
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.40e4
  • 1.40e4
  • 1.46e4
37.12243
  • 37.12243
  • 34.67450
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.40e4
  • 1.40e4
37.10371
  • 37.10371
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.43e4
  • 1.43e4
36.08275
  • 36.08275
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
35.93498
  • 35.93498
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.44e4
  • 1.44e4
35.46480
  • 35.46480
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
35.34144
  • 35.34144
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 1.60e4
35.12278
  • 35.12278
  • 28.38975
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
34.76178
  • 34.76178
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
34.75282
  • 34.75282
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
33.81847
  • 33.81847
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.49e4
  • 1.49e4
  • 1.55e4
33.38707
  • 33.38707
  • 30.52123
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 1.54e4
33.36916
  • 33.36916
  • 31.26455
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
  • 1.54e4
32.67500
  • 32.67500
  • 31.00484
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.54e4
  • 1.54e4
31.22873
  • 31.22873
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.74e4
27.89719
  • 27.89719
  • 22.30790
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAAEX03009785, AAEX03009786
EnsemblENSCAFG00000004790 (C1orf228)
HGNCHGNC:34345 (C1orf228)
Uniprot/SPTREMBLE2RBM5, E2RBM5_CANLF

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