C. lupus familiaris Gene: PCDH9 - ENSCAFG00000004944 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000004944
NamePCDH9
Descriptionprotocadherin 9 [Source:HGNC Symbol;Acc:HGNC:8661]
OrganismCanis lupus familiaris (dog)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.07e3
  • 2.07e3
90.74328
  • 90.74328
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
2.45e3
  • 2.45e3
89.01576
  • 89.01576
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
2.92e3
  • 2.92e3
86.91564
  • 86.91564
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.53e3
  • 3.53e3
84.21995
  • 84.21995
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
3.94e3
  • 3.94e3
82.37601
  • 82.37601
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.05e3
  • 4.05e3
  • 5.25e3
81.86907
  • 81.86907
  • 76.47569
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
6.88e3
  • 6.88e3
69.21906
  • 69.21906
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
8.65e3
  • 8.65e3
61.28426
  • 61.28426
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.07e3
  • 9.07e3
  • 1.49e4
  • 1.68e4
59.39110
  • 59.39110
  • 33.12287
  • 24.56117
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
9.17e3
  • 9.17e3
58.94232
  • 58.94232
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
9.26e3
  • 9.26e3
58.54044
  • 58.54044
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.08e4
  • 1.08e4
  • 1.24e4
51.85241
  • 51.85241
  • 44.61311
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
  • 1.17e4
51.58651
  • 51.58651
  • 47.68350
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
  • 1.56e4
50.63801
  • 50.63801
  • 30.19738
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.15e4
  • 1.15e4
48.51782
  • 48.51782
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.16e4
  • 1.16e4
  • 1.24e4
47.94018
  • 47.94018
  • 44.48204
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.22e4
  • 1.22e4
  • 1.39e4
45.56502
  • 45.56502
  • 37.56493
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.26e4
  • 1.26e4
43.50708
  • 43.50708
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.27e4
  • 1.27e4
42.97421
  • 42.97421
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
42.94152
  • 42.94152
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.28e4
  • 1.28e4
42.81748
  • 42.81748
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.29e4
  • 1.29e4
  • 1.54e4
42.34865
  • 42.34865
  • 30.99140
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
41.82339
  • 41.82339
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
40.40543
  • 40.40543
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.34e4
  • 1.34e4
39.79044
  • 39.79044
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.36e4
  • 1.36e4
  • 1.47e4
38.91725
  • 38.91725
  • 33.98263
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.57e4
38.40677
  • 38.40677
  • 29.77790
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
36.67831
  • 36.67831
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
35.20061
  • 35.20061
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
  • 1.57e4
34.60429
  • 34.60429
  • 29.52266
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.73e4
32.89249
  • 32.89249
  • 22.75658
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
1.51e4
  • 1.51e4
32.60792
  • 32.60792
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.71e4
32.23625
  • 32.23625
  • 23.35214
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
30.96901
  • 30.96901
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.41214
  • 28.41214
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
1.60e4
  • 1.60e4
28.39423
  • 28.39423
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
25.79312
  • 25.79312
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
23.78887
  • 23.78887
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAAEX03013220
EnsemblENSCAFG00000004944 (PCDH9)
HGNCHGNC:8661 (PCDH9)
Uniprot/SPTREMBLF1P7Y5, F1P7Y5_CANLF

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