C. lupus familiaris Gene: SCN5A - ENSCAFG00000005051 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000005051
NameSCN5A
Descriptionsodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
OrganismCanis lupus familiaris (dog)
Synonym(s)cdcd2, cmd1e, cmpd2, hb1, hb2, hbbd, hh1, iccd, ivf, lqt3, nav1.5, pfhb1, sss1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.10e3
  • 1.10e3
  • 6.65e3
95.09672
  • 95.09672
  • 70.22680
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.25e3
  • 1.25e3
94.40713
  • 94.40713
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.04e3
  • 2.04e3
  • 2.41e3
90.88008
  • 90.88008
  • 89.21346
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
2.70e3
  • 2.70e3
87.90973
  • 87.90973
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
3.23e3
  • 3.23e3
85.53197
  • 85.53197
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
3.48e3
  • 3.48e3
84.42146
  • 84.42146
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.49e3
  • 4.49e3
  • 7.98e3
79.88111
  • 79.88111
  • 64.27996
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
8.47e3
  • 8.47e3
62.06341
  • 62.06341
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
  • 1.34e4
51.13738
  • 51.13738
  • 39.97922
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.10e4
  • 1.10e4
  • 1.26e4
50.67244
  • 50.67244
  • 43.52051
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
48.45477
  • 48.45477
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
  • 1.68e4
46.81623
  • 46.81623
  • 24.91564
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
46.80427
  • 46.80427
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
1.30e4
  • 1.30e4
  • 1.51e4
  • 1.54e4
  • 1.62e4
41.60845
  • 41.60845
  • 32.58230
  • 31.14813
  • 27.55185
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
38.97994
  • 38.97994
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.38e4
  • 1.38e4
  • 1.51e4
38.18735
  • 38.18735
  • 32.36611
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.46e4
37.27834
  • 37.27834
  • 34.66326
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
36.74588
  • 36.74588
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
36.14656
  • 36.14656
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.44e4
  • 1.44e4
  • 1.56e4
35.38420
  • 35.38420
  • 30.04209
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
  • 1.73e4
34.68386
  • 34.68386
  • 22.37148
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
34.48863
  • 34.48863
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.16622
  • 34.16622
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.02293
  • 34.02293
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.48e4
  • 1.48e4
33.67365
  • 33.67365
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
32.58105
  • 32.58105
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 1.62e4
31.87354
  • 31.87354
  • 27.65623
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
30.40928
  • 30.40928
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.56e4
  • 1.56e4
30.29733
  • 30.29733
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
28.90919
  • 28.90919
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.60e4
  • 1.60e4
28.42311
  • 28.42311
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.61e4
  • 1.61e4
28.06582
  • 28.06582
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
27.85689
  • 27.85689
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.65e4
  • 1.65e4
25.95827
  • 25.95827
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
1.66e4
  • 1.66e4
25.59144
  • 25.59144
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
24.87887
  • 24.87887
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAAEX03013493
EnsemblENSCAFG00000005051 (SCN5A)
HGNCHGNC:10593 (SCN5A)
Uniprot/SPTREMBLF1PGU3, F1PGU3_CANLF, J9NX93, J9NX93_CANLF

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