C. lupus familiaris Gene: RPGRIP1 - ENSCAFG00000005511 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000005511
NameRPGRIP1
Descriptionretinitis pigmentosa GTPase regulator interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13436]
OrganismCanis lupus familiaris (dog)
Synonym(s)cord13, lca6, rgi1, rpgrip
Orthologs(s)13 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
878
  • 878
  • 1.58e3
96.08
  • 96.08
  • 92.92
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
50.09
  • 50.09
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
41.55
  • 41.55
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
40.16
  • 40.16
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
  • 1.53e4
38.90
  • 38.90
  • 31.76
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.37e4
  • 1.37e4
38.62
  • 38.62
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
36.62
  • 36.62
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
35.95
  • 35.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
  • 1.58e4
  • 1.70e4
35.18
  • 35.18
  • 29.21
  • 23.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
  • 1.52e4
  • 1.53e4
34.39
  • 34.39
  • 32.23
  • 31.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.73e4
34.13
  • 34.13
  • 22.82
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
33.71
  • 33.71
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.49e4
  • 1.49e4
33.42
  • 33.42
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.51e4
  • 1.51e4
32.30
  • 32.30
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.54e4
  • 1.54e4
31.32
  • 31.32
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
  • 1.66e4
29.37
  • 29.37
  • 25.96
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.59e4
  • 1.59e4
28.89
  • 28.89
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
27.10
  • 27.10
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
25.46
  • 25.46
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.69e4
  • 1.69e4
24.51
  • 24.51
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
22.25
  • 22.25
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
1.79e4
  • 1.79e4
20.05
  • 20.05
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.87e4
  • 1.87e4
16.52
  • 16.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000005511.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000005511.

Cross-references

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