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C. lupus familiaris Gene: PRPF40A - ENSCAFG00000005827 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000005827
NamePRPF40A
Descriptionpre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
OrganismCanis lupus familiaris (dog)
Synonym(s)fbp-11, fbp11, flaf1, flj20585, fnbp3, hip10, hypa, ny-ren-6, prp40
Orthologs(s)24 orthologs
Paralog(s)361 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
396
  • 396
  • 2.62e3
98.23
  • 98.23
  • 88.30
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
737
  • 737
  • 7.63e3
96.71
  • 96.71
  • 65.89
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
91.15
  • 91.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.00e3
  • 2.00e3
  • 3.64e3
91.05
  • 91.05
  • 83.71
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.15e3
  • 2.15e3
  • 4.05e3
  • 5.90e3
90.41
  • 90.41
  • 81.88
  • 73.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.33e3
  • 2.33e3
89.60
  • 89.60
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.34e3
  • 2.34e3
  • 3.75e3
89.54
  • 89.54
  • 83.22
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.35e3
  • 2.35e3
  • 3.23e3
89.51
  • 89.51
  • 85.58
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.44e3
  • 2.44e3
89.09
  • 89.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.64e3
  • 2.64e3
  • 2.90e3
  • 4.10e3
  • 4.73e3
  • 7.05e3
88.20
  • 88.20
  • 87.02
  • 81.67
  • 78.85
  • 68.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.65e3
  • 2.65e3
  • 6.34e3
88.17
  • 88.17
  • 71.67
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.67e3
  • 2.67e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
2.84e3
  • 2.84e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
2.85e3
  • 2.85e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.15e3
  • 3.15e3
  • 3.32e3
85.94
  • 85.94
  • 85.18
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
3.30e3
  • 3.30e3
85.25
  • 85.25
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
3.35e3
  • 3.35e3
85.04
  • 85.04
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
3.35e3
  • 3.35e3
85.01
  • 85.01
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
3.42e3
  • 3.42e3
  • 7.56e3
84.70
  • 84.70
  • 66.19
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.48e3
  • 3.48e3
  • 3.54e3
84.43
  • 84.43
  • 84.17
AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
3.51e3
  • 3.51e3
84.29
  • 84.29
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
3.53e3
  • 3.53e3
84.20
  • 84.20
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.54e3
  • 3.54e3
  • 4.76e3
84.19
  • 84.19
  • 78.72
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
3.54e3
  • 3.54e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
3.54e3
  • 3.54e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.55e3
  • 3.55e3
  • 4.38e3
84.14
  • 84.14
  • 80.44
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.57e3
  • 3.57e3
  • 4.10e3
84.04
  • 84.04
  • 81.66
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.72e3
  • 3.72e3
  • 5.69e3
83.37
  • 83.37
  • 74.57
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
3.80e3
  • 3.80e3
  • 4.35e3
  • 1.05e4
83.01
  • 83.01
  • 80.57
  • 53.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
3.83e3
  • 3.83e3
82.89
  • 82.89
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
3.85e3
  • 3.85e3
82.80
  • 82.80
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.91e3
  • 3.91e3
  • 4.20e3
82.50
  • 82.50
  • 81.23
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
3.92e3
  • 3.92e3
  • 6.28e3
82.48
  • 82.48
  • 71.92
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
3.95e3
  • 3.95e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
3.98e3
  • 3.98e3
82.21
  • 82.21
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
4.00e3
  • 4.00e3
82.10
  • 82.10
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
4.03e3
  • 4.03e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
4.21e3
  • 4.21e3
81.17
  • 81.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
4.24e3
  • 4.24e3
  • 4.30e3
  • 5.00e3
81.06
  • 81.06
  • 80.80
  • 77.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
4.28e3
  • 4.28e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.33e3
  • 4.33e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
4.34e3
  • 4.34e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.37e3
  • 4.37e3
  • 4.86e3
80.47
  • 80.47
  • 78.29
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
4.37e3
  • 4.37e3
80.45
  • 80.45
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
4.40e3
  • 4.40e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
4.55e3
  • 4.55e3
79.64
  • 79.64
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
4.99e3
  • 4.99e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
5.58e3
  • 5.58e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
5.64e3
  • 5.64e3
74.80
  • 74.80
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.69e3
  • 5.69e3
74.54
  • 74.54
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
5.92e3
  • 5.92e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
6.55e3
  • 6.55e3
70.71
  • 70.71
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
7.39e3
  • 7.39e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
51.33
  • 51.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000005827.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota361 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000005827.

Cross-references

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