C. lupus familiaris Gene: PRPF40A - ENSCAFG00000005827 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000005827
NamePRPF40A
Descriptionpre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
OrganismCanis lupus familiaris (dog)
Synonym(s)fbp-11, fbp11, flaf1, flj20585, fnbp3, hip10, hypa, ny-ren-6, prp40

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
396
  • 396
  • 2.55e3
98.23124
  • 98.23124
  • 88.58436
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
737
  • 737
  • 7.81e3
96.70428
  • 96.70428
  • 65.03358
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
91.13828
  • 91.13828
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.00e3
  • 2.00e3
  • 3.64e3
91.04258
  • 91.04258
  • 83.68709
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.15e3
  • 2.15e3
  • 4.05e3
  • 5.83e3
90.39902
  • 90.39902
  • 81.85563
  • 73.88501
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.33e3
  • 2.33e3
89.58445
  • 89.58445
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.34e3
  • 2.34e3
  • 3.75e3
89.52530
  • 89.52530
  • 83.19689
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.35e3
  • 2.35e3
  • 3.23e3
89.49955
  • 89.49955
  • 85.55884
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.44e3
  • 2.44e3
89.07617
  • 89.07617
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.64e3
  • 2.64e3
  • 2.90e3
  • 4.10e3
  • 4.69e3
88.18879
  • 88.18879
  • 87.00596
  • 81.64517
  • 79.02561
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.65e3
  • 2.65e3
  • 6.29e3
88.15704
  • 88.15704
  • 71.85653
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.67e3
  • 2.67e3
88.03717
  • 88.03717
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
2.84e3
  • 2.84e3
87.28282
  • 87.28282
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
2.85e3
  • 2.85e3
87.25049
  • 87.25049
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
3.30e3
  • 3.30e3
85.22748
  • 85.22748
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
3.32e3
  • 3.32e3
85.16031
  • 85.16031
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
3.35e3
  • 3.35e3
85.02149
  • 85.02149
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
3.35e3
  • 3.35e3
84.99015
  • 84.99015
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
3.42e3
  • 3.42e3
84.67670
  • 84.67670
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.48e3
  • 3.48e3
  • 3.54e3
84.40964
  • 84.40964
  • 84.14831
AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
3.51e3
  • 3.51e3
84.27369
  • 84.27369
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
3.53e3
  • 3.53e3
84.18413
  • 84.18413
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.54e3
  • 3.54e3
  • 4.76e3
84.17070
  • 84.17070
  • 78.68977
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
3.54e3
  • 3.54e3
84.16174
  • 84.16174
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
3.54e3
  • 3.54e3
84.16174
  • 84.16174
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.55e3
  • 3.55e3
  • 4.38e3
84.11683
  • 84.11683
  • 80.41376
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.57e3
  • 3.57e3
  • 4.10e3
84.02293
  • 84.02293
  • 81.63622
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
3.72e3
  • 3.72e3
83.35124
  • 83.35124
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.80e3
  • 3.80e3
  • 4.35e3
82.98854
  • 82.98854
  • 80.54809
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
3.83e3
  • 3.83e3
82.86763
  • 82.86763
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
3.85e3
  • 3.85e3
82.77808
  • 82.77808
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.91e3
  • 3.91e3
  • 4.20e3
82.47703
  • 82.47703
  • 81.20589
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
3.92e3
  • 3.92e3
82.46015
  • 82.46015
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
3.95e3
  • 3.95e3
82.32133
  • 82.32133
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
3.98e3
  • 3.98e3
82.18252
  • 82.18252
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
4.00e3
  • 4.00e3
82.07953
  • 82.07953
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
4.03e3
  • 4.03e3
81.96579
  • 81.96579
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
4.21e3
  • 4.21e3
81.14813
  • 81.14813
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.24e3
  • 4.24e3
  • 4.30e3
81.03618
  • 81.03618
  • 80.77199
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
4.28e3
  • 4.28e3
80.83468
  • 80.83468
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.33e3
  • 4.33e3
80.62422
  • 80.62422
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
4.34e3
  • 4.34e3
80.56600
  • 80.56600
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.37e3
  • 4.37e3
  • 4.86e3
80.44510
  • 80.44510
  • 78.25748
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
4.37e3
  • 4.37e3
80.42271
  • 80.42271
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
4.40e3
  • 4.40e3
80.29285
  • 80.29285
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
4.55e3
  • 4.55e3
79.61669
  • 79.61669
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
4.99e3
  • 4.99e3
77.67777
  • 77.67777
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
5.58e3
  • 5.58e3
75.03582
  • 75.03582
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
5.64e3
  • 5.64e3
74.77087
  • 74.77087
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.69e3
  • 5.69e3
74.51057
  • 74.51057
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
5.92e3
  • 5.92e3
73.49543
  • 73.49543
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
6.55e3
  • 6.55e3
70.66989
  • 70.66989
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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