C. lupus familiaris Gene: COL6A5 - ENSCAFG00000006046 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000006046
NameCOL6A5
Descriptioncollagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:HGNC:26674]
OrganismCanis lupus familiaris (dog)
Synonym(s)col29a1, flj35880, vwa4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000945stomach
  • UBERON:0007222late adult stage
875
  • 875
96.08633
  • 96.08633
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.75e3
  • 1.75e3
  • 4.62e3
  • 1.56e4
92.15028
  • 92.15028
  • 79.32115
  • 30.26348
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.17e3
  • 3.17e3
  • 1.92e4
85.79169
  • 85.79169
  • 14.01943
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
5.07e3
  • 5.07e3
77.32402
  • 77.32402
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
5.63e3
  • 5.63e3
74.80745
  • 74.80745
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
5.68e3
  • 5.68e3
  • 7.94e3
  • 1.16e4
  • 1.43e4
74.58804
  • 74.58804
  • 64.45679
  • 47.84166
  • 35.86562
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
6.11e3
  • 6.11e3
72.63017
  • 72.63017
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.56e3
  • 6.56e3
  • 1.10e4
70.62959
  • 70.62959
  • 50.90005
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
8.79e3
  • 8.79e3
60.64840
  • 60.64840
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.25e4
52.86136
  • 52.86136
  • 44.06694
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
52.78972
  • 52.78972
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.15e4
  • 1.15e4
  • 1.36e4
48.68270
  • 48.68270
  • 39.20383
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.18e4
  • 1.18e4
47.25954
  • 47.25954
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.24e4
  • 1.24e4
44.61311
  • 44.61311
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.50e4
43.45782
  • 43.45782
  • 32.79599
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
42.87731
  • 42.87731
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
42.45925
  • 42.45925
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
42.32939
  • 42.32939
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.35e4
  • 1.35e4
  • 1.42e4
39.76728
  • 39.76728
  • 36.50184
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
  • 1.64e4
39.76634
  • 39.76634
  • 26.46427
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
  • 1.43e4
36.84399
  • 36.84399
  • 36.09171
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
33.47080
  • 33.47080
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.54e4
32.29894
  • 32.29894
  • 31.23321
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
  • 1.96e4
29.19130
  • 29.19130
  • 12.37583
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
22.79241
  • 22.79241
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAAEX03013589
EnsemblENSCAFG00000006046 (COL6A5)
HGNCHGNC:26674 (COL6A5)
Uniprot/SPTREMBLE2R089, E2R089_CANLF, F1Q2F7, F1Q2F7_CANLF

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