C. lupus familiaris Gene: COL4A1 - ENSCAFG00000006062 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000006062
NameCOL4A1
Descriptioncollagen, type IV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2202]
OrganismCanis lupus familiaris (dog)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
397
  • 397
98.22676
  • 98.22676
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
543
  • 543
  • 3.21e3
97.57339
  • 97.57339
  • 85.63452
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
569
  • 569
  • 4.19e3
97.45656
  • 97.45656
  • 81.22761
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
595
  • 595
  • 1.65e3
97.34077
  • 97.34077
  • 92.63837
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
617
  • 617
  • 2.31e3
97.24163
  • 97.24163
  • 89.66505
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
622
  • 622
  • 941
97.21924
  • 97.21924
  • 95.79079
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
625
  • 625
97.20580
  • 97.20580
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
651
  • 651
  • 666
  • 1.14e3
97.08938
  • 97.08938
  • 97.02333
  • 94.90865
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
774
  • 774
96.53860
  • 96.53860
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
808
  • 808
96.38635
  • 96.38635
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
822
  • 822
96.32366
  • 96.32366
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
894
  • 894
96.00251
  • 96.00251
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
1.00e3
  • 1.00e3
95.52212
  • 95.52212
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.16e3
  • 1.16e3
  • 9.47e3
94.79670
  • 94.79670
  • 57.58114
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.21e3
  • 1.21e3
94.58177
  • 94.58177
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
94.56385
  • 94.56385
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.24e3
  • 1.24e3
  • 4.18e3
94.43400
  • 94.43400
  • 81.29142
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.25e3
  • 1.25e3
94.40265
  • 94.40265
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.31e3
  • 1.31e3
94.12054
  • 94.12054
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.47e3
  • 1.47e3
93.44438
  • 93.44438
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.84e3
  • 1.84e3
91.78278
  • 91.78278
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.93e3
  • 1.93e3
91.34874
  • 91.34874
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.02e3
  • 2.02e3
  • 3.55e3
90.94103
  • 90.94103
  • 84.09009
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.11e3
  • 2.11e3
  • 2.25e3
90.54800
  • 90.54800
  • 89.91044
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
2.16e3
  • 2.16e3
90.33674
  • 90.33674
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
2.17e3
  • 2.17e3
90.26957
  • 90.26957
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
2.20e3
  • 2.20e3
90.14419
  • 90.14419
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
2.87e3
  • 2.87e3
87.15296
  • 87.15296
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
3.06e3
  • 3.06e3
86.31560
  • 86.31560
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
3.09e3
  • 3.09e3
86.17679
  • 86.17679
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.09e3
  • 3.09e3
  • 4.01e3
86.14992
  • 86.14992
  • 82.06162
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.34e3
  • 3.34e3
  • 7.49e3
85.04379
  • 85.04379
  • 66.45173
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
3.34e3
  • 3.34e3
85.03941
  • 85.03941
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
3.34e3
  • 3.34e3
85.02915
  • 85.02915
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
3.39e3
  • 3.39e3
84.81551
  • 84.81551
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
3.78e3
  • 3.78e3
83.06466
  • 83.06466
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
3.85e3
  • 3.85e3
82.74673
  • 82.74673
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.10e3
  • 4.10e3
  • 4.25e3
  • 5.16e3
  • 7.25e3
81.66102
  • 81.66102
  • 80.97166
  • 76.91205
  • 67.52194
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
4.16e3
  • 4.16e3
81.38993
  • 81.38993
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
5.96e3
  • 5.96e3
73.32980
  • 73.32980
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.47e3
  • 6.47e3
71.04044
  • 71.04044
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.82e3
  • 6.82e3
  • 8.23e3
69.46324
  • 69.46324
  • 63.13810
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
7.54e3
  • 7.54e3
66.25470
  • 66.25470
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
8.00e3
  • 8.00e3
64.17356
  • 64.17356
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
8.17e3
  • 8.17e3
63.40229
  • 63.40229
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
54.86298
  • 54.86298
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.04e4
  • 1.04e4
53.50291
  • 53.50291
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.06e4
  • 1.06e4
52.57926
  • 52.57926
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
47.96704
  • 47.96704
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
40.59198
  • 40.59198
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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