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C. lupus familiaris Gene: SEMA3C - ENSCAFG00000006381 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000006381
NameSEMA3C
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:HGNC Symbol;Acc:HGNC:10725]
OrganismCanis lupus familiaris (dog)
Synonym(s)semae, seme
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000312keratinocyte
  • UBERON:0000104life cycle
377
  • 377
98.32
  • 98.32
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
482
  • 482
  • 1.13e4
97.85
  • 97.85
  • 49.25
AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
678
  • 678
96.97
  • 96.97
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
888
  • 888
96.03
  • 96.03
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
945
  • 945
  • 3.97e3
95.78
  • 95.78
  • 82.27
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
  • 9.40e3
94.32
  • 94.32
  • 57.96
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.30e3
  • 1.30e3
94.19
  • 94.19
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.48e3
  • 1.48e3
  • 2.01e3
93.37
  • 93.37
  • 91.02
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.70e3
  • 1.70e3
  • 4.85e3
92.42
  • 92.42
  • 78.30
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.71e3
  • 1.71e3
  • 1.27e4
92.35
  • 92.35
  • 43.39
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.90e3
  • 1.90e3
  • 2.28e3
91.51
  • 91.51
  • 89.79
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.91e3
  • 1.91e3
  • 9.25e3
91.44
  • 91.44
  • 58.62
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
2.06e3
  • 2.06e3
90.81
  • 90.81
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
2.31e3
  • 2.31e3
89.69
  • 89.69
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
2.34e3
  • 2.34e3
  • 4.07e3
  • 4.90e3
89.54
  • 89.54
  • 81.79
  • 78.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.38e3
  • 2.38e3
  • 2.70e3
89.37
  • 89.37
  • 87.92
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
2.54e3
  • 2.54e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
2.75e3
  • 2.75e3
  • 5.43e3
87.71
  • 87.71
  • 75.72
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
2.84e3
  • 2.84e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.01e3
  • 3.01e3
  • 3.93e3
86.56
  • 86.56
  • 82.42
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
3.01e3
  • 3.01e3
  • 4.52e3
86.56
  • 86.56
  • 79.80
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.11e3
  • 3.11e3
  • 8.21e3
86.12
  • 86.12
  • 63.29
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
3.74e3
  • 3.74e3
83.28
  • 83.28
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
3.86e3
  • 3.86e3
82.74
  • 82.74
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
3.87e3
  • 3.87e3
82.71
  • 82.71
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
6.29e3
  • 6.29e3
71.88
  • 71.88
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
6.98e3
  • 6.98e3
68.80
  • 68.80
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
7.17e3
  • 7.17e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
7.46e3
  • 7.46e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
7.50e3
  • 7.50e3
66.45
  • 66.45
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
7.71e3
  • 7.71e3
65.53
  • 65.53
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
7.88e3
  • 7.88e3
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.91e3
  • 7.91e3
  • 1.19e4
  • 1.25e4
  • 1.36e4
  • 1.44e4
64.62
  • 64.62
  • 46.67
  • 44.15
  • 39.15
  • 35.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
7.99e3
  • 7.99e3
64.27
  • 64.27
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.63e3
  • 8.63e3
  • 1.11e4
  • 1.56e4
61.43
  • 61.43
  • 50.51
  • 30.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.63e3
  • 8.63e3
61.42
  • 61.42
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
9.34e3
  • 9.34e3
58.23
  • 58.23
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
9.51e3
  • 9.51e3
57.48
  • 57.48
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.82e3
  • 9.82e3
  • 1.34e4
56.07
  • 56.07
  • 40.19
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.09e4
  • 1.09e4
51.25
  • 51.25
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
48.57
  • 48.57
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
48.32
  • 48.32
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.16e4
  • 1.16e4
48.05
  • 48.05
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.20e4
  • 1.20e4
46.41
  • 46.41
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
46.29
  • 46.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
  • 1.31e4
  • 1.32e4
44.44
  • 44.44
  • 41.42
  • 40.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.29e4
  • 1.29e4
  • 1.40e4
42.45
  • 42.45
  • 37.28
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.31e4
  • 1.31e4
41.60
  • 41.60
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
38.98
  • 38.98
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.42e4
  • 1.42e4
  • 1.52e4
36.41
  • 36.41
  • 32.25
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
35.49
  • 35.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000006381.

Cross-references

EnsemblENSCAFG00000006381 (SEMA3C)
HGNCHGNC:10725 (SEMA3C)
EMBLAAEX03011267, AAEX03011268
Uniprot/SPTREMBLE2R0R3, E2R0R3_CANLF

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