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C. lupus familiaris Gene: VPS16 - ENSCAFG00000006534 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000006534
NameVPS16
DescriptionVPS16, CORVET/HOPS core subunit [Source:HGNC Symbol;Acc:HGNC:14584]
OrganismCanis lupus familiaris (dog)
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.37e3
  • 3.37e3
  • 7.41e3
84.96
  • 84.96
  • 66.87
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
4.40e3
  • 4.40e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
5.07e3
  • 5.07e3
77.35
  • 77.35
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
5.08e3
  • 5.08e3
77.30
  • 77.30
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.32e3
  • 5.32e3
  • 5.99e3
  • 6.21e3
  • 7.01e3
  • 7.46e3
76.23
  • 76.23
  • 73.22
  • 72.25
  • 68.67
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
5.55e3
  • 5.55e3
  • 7.57e3
75.17
  • 75.17
  • 66.17
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
5.63e3
  • 5.63e3
74.83
  • 74.83
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.74e3
  • 5.74e3
  • 7.53e3
74.34
  • 74.34
  • 66.35
AEIR
  • AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
5.85e3
  • 5.85e3
73.83
  • 73.83
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.98e3
  • 5.98e3
  • 8.29e3
73.27
  • 73.27
  • 62.92
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.23e3
  • 6.23e3
  • 7.61e3
72.14
  • 72.14
  • 65.96
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
6.31e3
  • 6.31e3
  • 7.37e3
71.80
  • 71.80
  • 67.07
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
6.35e3
  • 6.35e3
71.62
  • 71.62
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
6.35e3
  • 6.35e3
71.61
  • 71.61
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
6.39e3
  • 6.39e3
71.45
  • 71.45
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
6.53e3
  • 6.53e3
70.82
  • 70.82
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.54e3
  • 6.54e3
  • 7.52e3
70.74
  • 70.74
  • 66.39
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
6.58e3
  • 6.58e3
70.59
  • 70.59
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.68e3
  • 6.68e3
  • 7.94e3
70.14
  • 70.14
  • 64.50
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.70e3
  • 6.70e3
  • 6.72e3
  • 7.13e3
70.05
  • 70.05
  • 69.96
  • 68.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
6.75e3
  • 6.75e3
69.81
  • 69.81
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
6.78e3
  • 6.78e3
69.67
  • 69.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.85e3
  • 6.85e3
  • 7.34e3
  • 7.55e3
69.38
  • 69.38
  • 67.18
  • 66.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
6.91e3
  • 6.91e3
69.12
  • 69.12
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.91e3
  • 6.91e3
  • 8.30e3
69.11
  • 69.11
  • 62.91
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
7.01e3
  • 7.01e3
68.64
  • 68.64
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
7.03e3
  • 7.03e3
68.56
  • 68.56
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
7.04e3
  • 7.04e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
7.07e3
  • 7.07e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
7.12e3
  • 7.12e3
68.17
  • 68.17
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.14e3
  • 7.14e3
68.07
  • 68.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
7.16e3
  • 7.16e3
67.97
  • 67.97
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
7.20e3
  • 7.20e3
67.79
  • 67.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
7.26e3
  • 7.26e3
  • 8.25e3
67.55
  • 67.55
  • 63.12
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
7.27e3
  • 7.27e3
67.50
  • 67.50
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.28e3
  • 7.28e3
  • 7.34e3
67.47
  • 67.47
  • 67.19
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
7.30e3
  • 7.30e3
67.34
  • 67.34
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
7.39e3
  • 7.39e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
66.86
  • 66.86
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
66.85
  • 66.85
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.44e3
  • 7.44e3
  • 7.66e3
66.75
  • 66.75
  • 65.76
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
7.53e3
  • 7.53e3
66.31
  • 66.31
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.57e3
  • 7.57e3
  • 8.74e3
66.15
  • 66.15
  • 60.90
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
7.93e3
  • 7.93e3
64.55
  • 64.55
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.99e3
  • 7.99e3
  • 8.20e3
  • 9.27e3
64.28
  • 64.28
  • 63.34
  • 58.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
8.12e3
  • 8.12e3
63.71
  • 63.71
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
8.30e3
  • 8.30e3
62.88
  • 62.88
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
8.36e3
  • 8.36e3
62.63
  • 62.63
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
8.42e3
  • 8.42e3
62.36
  • 62.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
8.47e3
  • 8.47e3
  • 8.69e3
62.14
  • 62.14
  • 61.13
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
8.63e3
  • 8.63e3
  • 8.88e3
61.43
  • 61.43
  • 60.31
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
8.64e3
  • 8.64e3
61.38
  • 61.38
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
8.77e3
  • 8.77e3
60.77
  • 60.77
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
8.88e3
  • 8.88e3
60.29
  • 60.29
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
8.96e3
  • 8.96e3
59.95
  • 59.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000006534.

Cross-references

EnsemblENSCAFG00000006534 (VPS16)
HGNCHGNC:14584 (VPS16)
EMBLAAEX03013836, AAEX03013837
Uniprot/SPTREMBLE2QZL5, E2QZL5_CANLF

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