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C. lupus familiaris Gene: HOXC13 - ENSCAFG00000006648 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000006648
NameHOXC13
Descriptionhomeobox C13 [Source:HGNC Symbol;Acc:HGNC:5125]
OrganismCanis lupus familiaris (dog)
Synonym(s)hox3, hox3g
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
2.03e3
  • 2.03e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.76e3
  • 7.76e3
  • 9.47e3
65.31
  • 65.31
  • 57.64
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
7.93e3
  • 7.93e3
64.54
  • 64.54
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
50.63
  • 50.63
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
49.72
  • 49.72
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
40.44
  • 40.44
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
35.42
  • 35.42
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
32.49
  • 32.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.79e4
  • 1.79e4
20.09
  • 20.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000006648.

Cross-references

EnsemblENSCAFG00000006648 (HOXC13)
HGNCHGNC:5125 (HOXC13)
EMBLAAEX03014974
Uniprot/SPTREMBLE2QU89, E2QU89_CANLF

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