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C. lupus familiaris Gene: TRIM55 - ENSCAFG00000007299 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000007299
NameTRIM55
Descriptiontripartite motif containing 55 [Source:HGNC Symbol;Acc:HGNC:14215]
OrganismCanis lupus familiaris (dog)
Synonym(s)murf-2, rnf29
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
720
  • 720
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
777
  • 777
  • 1.35e3
96.53
  • 96.53
  • 93.98
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
938
  • 938
95.81
  • 95.81
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.00e3
  • 1.00e3
  • 1.44e3
95.52
  • 95.52
  • 93.56
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.03e3
  • 1.03e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.11e3
  • 1.11e3
  • 1.15e3
95.02
  • 95.02
  • 94.84
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.40e3
  • 1.40e3
93.73
  • 93.73
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.99e3
  • 1.99e3
91.11
  • 91.11
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.54e3
  • 2.54e3
  • 3.73e3
88.67
  • 88.67
  • 83.33
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
3.69e3
  • 3.69e3
83.52
  • 83.52
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
39.99
  • 39.99
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.35e4
  • 1.35e4
39.42
  • 39.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
  • 1.44e4
  • 1.52e4
39.31
  • 39.31
  • 35.63
  • 32.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.37e4
  • 1.37e4
  • 1.52e4
38.70
  • 38.70
  • 31.90
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
38.59
  • 38.59
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.39e4
  • 1.39e4
37.66
  • 37.66
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
36.87
  • 36.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
35.05
  • 35.05
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
  • 1.56e4
  • 2.03e4
33.89
  • 33.89
  • 30.22
  • 9.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
33.83
  • 33.83
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.61e4
  • 1.81e4
33.69
  • 33.69
  • 28.05
  • 19.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
  • 1.57e4
  • 1.63e4
  • 1.75e4
32.84
  • 32.84
  • 29.61
  • 27.32
  • 21.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
  • 1.71e4
30.40
  • 30.40
  • 23.44
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.57e4
  • 1.57e4
29.60
  • 29.60
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.59e4
  • 1.59e4
  • 1.66e4
29.00
  • 29.00
  • 25.96
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.59e4
  • 1.59e4
28.92
  • 28.92
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
  • 1.79e4
28.81
  • 28.81
  • 19.94
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
  • 1.79e4
28.40
  • 28.40
  • 19.90
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
26.92
  • 26.92
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
1.64e4
  • 1.64e4
26.86
  • 26.86
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
24.97
  • 24.97
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
1.69e4
  • 1.69e4
24.29
  • 24.29
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.70e4
  • 1.70e4
24.18
  • 24.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
24.03
  • 24.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.77e4
  • 1.77e4
21.01
  • 21.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000007299.

Cross-references

EnsemblENSCAFG00000007299 (TRIM55)
HGNCHGNC:14215 (TRIM55)
EMBLAAEX03015838
Uniprot/SPTREMBLF6Y6K4, F6Y6K4_CANLF

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