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C. lupus familiaris Gene: LRRTM1 - ENSCAFG00000008098 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000008098
NameLRRTM1
Descriptionleucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
OrganismCanis lupus familiaris (dog)
Synonym(s)flj32082
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.03e3
  • 3.03e3
  • 1.77e4
86.45
  • 86.45
  • 20.87
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
3.03e3
  • 3.03e3
86.44
  • 86.44
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
3.15e3
  • 3.15e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
3.92e3
  • 3.92e3
82.46
  • 82.46
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.97e3
  • 4.97e3
77.79
  • 77.79
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
5.99e3
  • 5.99e3
73.21
  • 73.21
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
7.33e3
  • 7.33e3
67.22
  • 67.22
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.94e3
  • 7.94e3
  • 1.36e4
  • 2.00e4
64.48
  • 64.48
  • 39.27
  • 10.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
8.49e3
  • 8.49e3
62.02
  • 62.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
  • 1.50e4
  • 1.59e4
47.94
  • 47.94
  • 33.13
  • 28.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
45.99
  • 45.99
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.26e4
  • 1.26e4
  • 1.43e4
43.70
  • 43.70
  • 36.10
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
  • 1.30e4
43.43
  • 43.43
  • 42.05
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.27e4
  • 1.27e4
43.02
  • 43.02
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.28e4
  • 1.28e4
42.95
  • 42.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
  • 1.47e4
  • 1.95e4
  • 2.08e4
41.08
  • 41.08
  • 34.29
  • 12.94
  • 7.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.36e4
40.50
  • 40.50
  • 39.20
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.35e4
  • 1.35e4
39.85
  • 39.85
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.40e4
  • 1.40e4
37.49
  • 37.49
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
35.49
  • 35.49
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.44e4
  • 1.44e4
35.43
  • 35.43
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
34.87
  • 34.87
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
33.61
  • 33.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 1.93e4
33.53
  • 33.53
  • 13.62
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.75e4
32.95
  • 32.95
  • 21.74
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
32.82
  • 32.82
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
32.71
  • 32.71
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.51e4
  • 1.51e4
32.40
  • 32.40
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
  • 1.65e4
32.36
  • 32.36
  • 26.11
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.51e4
  • 1.51e4
  • 1.72e4
32.27
  • 32.27
  • 23.31
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
  • 1.85e4
30.54
  • 30.54
  • 17.11
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.57e4
  • 1.57e4
29.65
  • 29.65
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
29.46
  • 29.46
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
29.21
  • 29.21
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
  • 1.70e4
28.65
  • 28.65
  • 24.02
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.36
  • 28.36
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
25.33
  • 25.33
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
  • 2.14e4
22.55
  • 22.55
  • 4.27
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
21.90
  • 21.90
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000008098.

Cross-references

EnsemblENSCAFG00000008098 (LRRTM1)
HGNCHGNC:19408 (LRRTM1)
EMBLAAEX03010953
Uniprot/SPTREMBLE2QW21, E2QW21_CANLF

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