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C. lupus familiaris Gene: CHST1 - ENSCAFG00000009385 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000009385
NameCHST1
Descriptioncarbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1969]
OrganismCanis lupus familiaris (dog)
Synonym(s)c6st, ksgal6st, sulfo1
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
892
  • 892
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
946
  • 946
95.77
  • 95.77
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.05e3
  • 1.05e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.15e3
  • 1.15e3
94.85
  • 94.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
2.16e3
  • 2.16e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
3.00e3
  • 3.00e3
86.59
  • 86.59
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.30e3
  • 3.30e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.09e3
  • 4.09e3
  • 5.84e3
81.70
  • 81.70
  • 73.91
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.08e3
  • 5.08e3
  • 5.40e3
  • 8.47e3
77.28
  • 77.28
  • 75.86
  • 62.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
5.24e3
  • 5.24e3
76.57
  • 76.57
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.51e3
  • 5.51e3
  • 1.05e4
75.36
  • 75.36
  • 52.97
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
5.53e3
  • 5.53e3
75.29
  • 75.29
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
5.93e3
  • 5.93e3
73.48
  • 73.48
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
6.27e3
  • 6.27e3
71.98
  • 71.98
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
6.29e3
  • 6.29e3
71.87
  • 71.87
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
6.90e3
  • 6.90e3
69.14
  • 69.14
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
7.02e3
  • 7.02e3
  • 9.84e3
  • 1.03e4
68.61
  • 68.61
  • 55.99
  • 54.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.70e3
  • 7.70e3
  • 1.29e4
  • 1.43e4
65.56
  • 65.56
  • 42.14
  • 36.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
7.71e3
  • 7.71e3
  • 1.09e4
65.51
  • 65.51
  • 51.24
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
7.82e3
  • 7.82e3
65.05
  • 65.05
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
7.83e3
  • 7.83e3
  • 1.05e4
64.97
  • 64.97
  • 53.25
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
8.14e3
  • 8.14e3
63.61
  • 63.61
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
8.62e3
  • 8.62e3
61.48
  • 61.48
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
8.72e3
  • 8.72e3
61.00
  • 61.00
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
9.40e3
  • 9.40e3
57.96
  • 57.96
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.74e3
  • 9.74e3
  • 1.41e4
56.45
  • 56.45
  • 36.76
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
9.92e3
  • 9.92e3
  • 1.06e4
55.66
  • 55.66
  • 52.55
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
  • 1.23e4
  • 1.24e4
  • 1.40e4
  • 1.52e4
54.19
  • 54.19
  • 44.99
  • 44.52
  • 37.37
  • 32.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
  • 1.08e4
53.22
  • 53.22
  • 51.66
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
51.63
  • 51.63
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.11e4
  • 1.11e4
  • 1.22e4
50.32
  • 50.32
  • 45.49
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
  • 1.15e4
49.48
  • 49.48
  • 48.40
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.13e4
  • 1.13e4
  • 1.24e4
49.34
  • 49.34
  • 44.67
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
48.33
  • 48.33
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.20e4
  • 1.20e4
46.38
  • 46.38
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.52e4
44.10
  • 44.10
  • 31.93
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.76e4
43.69
  • 43.69
  • 21.37
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.30e4
  • 1.30e4
41.94
  • 41.94
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.31e4
  • 1.31e4
41.41
  • 41.41
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
  • 1.42e4
41.34
  • 41.34
  • 36.70
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.32e4
  • 1.32e4
41.01
  • 41.01
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.33e4
  • 1.33e4
40.67
  • 40.67
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
39.98
  • 39.98
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.38e4
  • 1.38e4
38.10
  • 38.10
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
37.63
  • 37.63
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
36.75
  • 36.75
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
35.22
  • 35.22
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
34.71
  • 34.71
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
33.42
  • 33.42
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
32.97
  • 32.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.66
  • 28.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria2 species2 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000009385.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000009385.

Cross-references

EnsemblENSCAFG00000009385 (CHST1)
HGNCHGNC:1969 (CHST1)
EMBLAAEX03011508
Uniprot/SPTREMBLE2RAT7, E2RAT7_CANLF

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