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C. lupus familiaris Gene: SYCP2L - ENSCAFG00000009748 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000009748
NameSYCP2L
Descriptionsynaptonemal complex protein 2 like [Source:HGNC Symbol;Acc:HGNC:21537]
OrganismCanis lupus familiaris (dog)
Synonym(s)c6orf177, dj62d2.1, no145
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.39e3
  • 1.39e3
93.78
  • 93.78
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
7.38e3
  • 7.38e3
67.02
  • 67.02
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
9.03e3
  • 9.03e3
59.64
  • 59.64
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.08e4
  • 1.08e4
51.89
  • 51.89
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
  • 1.24e4
51.86
  • 51.86
  • 44.53
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.64e4
48.80
  • 48.80
  • 26.82
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.27e4
45.80
  • 45.80
  • 43.13
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.42e4
  • 1.42e4
  • 1.48e4
36.45
  • 36.45
  • 33.99
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
35.41
  • 35.41
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.49e4
  • 1.49e4
33.53
  • 33.53
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.62e4
32.71
  • 32.71
  • 27.41
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
32.31
  • 32.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.53e4
  • 1.53e4
  • 1.75e4
31.45
  • 31.45
  • 21.55
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
31.12
  • 31.12
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
31.05
  • 31.05
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
  • 1.75e4
  • 1.75e4
30.87
  • 30.87
  • 21.65
  • 21.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.56e4
  • 1.56e4
30.45
  • 30.45
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
30.09
  • 30.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
27.21
  • 27.21
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
27.18
  • 27.18
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
27.10
  • 27.10
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
26.57
  • 26.57
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.65e4
  • 1.65e4
26.39
  • 26.39
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
25.56
  • 25.56
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
24.19
  • 24.19
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.74e4
  • 1.74e4
22.02
  • 22.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000009748.

Cross-references

EnsemblENSCAFG00000009748 (SYCP2L)
HGNCHGNC:21537 (SYCP2L)
EMBLAAEX03017531, AAEX03017532
Uniprot/SPTREMBLF1PC19, F1PC19_CANLF

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