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C. lupus familiaris Gene: SNRPN - ENSCAFG00000010127 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000010127
NameSNRPN
Descriptionsmall nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:HGNC:11164]
OrganismCanis lupus familiaris (dog)
Synonym(s)hcern3, pwcr, rt-li, sm-d, smn, snrnp-n, snurf, snurf-snrpn
Orthologs(s)20 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
127
  • 127
99.44
  • 99.44
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
168
  • 168
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
169
  • 169
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
178
  • 178
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
193
  • 193
  • 198
99.14
  • 99.14
  • 99.12
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
206
  • 206
99.08
  • 99.08
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
253
  • 253
98.87
  • 98.87
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
348
  • 348
98.45
  • 98.45
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
368
  • 368
  • 394
98.36
  • 98.36
  • 98.24
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
439
  • 439
98.04
  • 98.04
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
464
  • 464
  • 580
97.93
  • 97.93
  • 97.41
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
528
  • 528
  • 632
97.64
  • 97.64
  • 97.18
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
628
  • 628
  • 1.05e3
97.20
  • 97.20
  • 95.33
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
744
  • 744
96.68
  • 96.68
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
776
  • 776
96.53
  • 96.53
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
798
  • 798
96.44
  • 96.44
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
861
  • 861
96.16
  • 96.16
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
949
  • 949
  • 1.29e3
95.76
  • 95.76
  • 94.23
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
971
  • 971
95.66
  • 95.66
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
978
  • 978
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.00e3
  • 1.00e3
95.52
  • 95.52
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.06e3
  • 1.06e3
  • 1.28e3
  • 1.28e3
95.29
  • 95.29
  • 94.30
  • 94.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.11e3
  • 1.11e3
95.05
  • 95.05
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.12e3
  • 1.12e3
  • 5.17e3
95.01
  • 95.01
  • 76.88
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.73
  • 94.73
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.24e3
  • 1.24e3
94.44
  • 94.44
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.27e3
  • 1.27e3
  • 1.43e3
94.33
  • 94.33
  • 93.61
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.27e3
  • 1.27e3
  • 1.40e3
  • 1.42e3
94.32
  • 94.32
  • 93.73
  • 93.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.35e3
  • 1.35e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.38e3
  • 1.38e3
93.85
  • 93.85
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.40e3
  • 1.40e3
93.73
  • 93.73
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
  • 1.45e3
  • 1.54e3
93.71
  • 93.71
  • 93.51
  • 93.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.48e3
  • 1.48e3
  • 3.53e3
93.37
  • 93.37
  • 84.22
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.50e3
  • 1.50e3
93.29
  • 93.29
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.53e3
  • 1.53e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.54e3
  • 1.54e3
  • 1.58e3
93.10
  • 93.10
  • 92.93
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.59e3
  • 1.59e3
92.88
  • 92.88
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.60e3
  • 1.60e3
92.84
  • 92.84
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.63e3
  • 1.63e3
92.72
  • 92.72
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.63e3
  • 1.63e3
92.71
  • 92.71
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.75e3
  • 1.75e3
  • 2.31e3
92.16
  • 92.16
  • 89.66
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
  • 4.02e3
91.77
  • 91.77
  • 82.01
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.85e3
  • 1.85e3
  • 2.80e3
91.72
  • 91.72
  • 87.47
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.89e3
  • 1.89e3
  • 1.96e3
91.56
  • 91.56
  • 91.24
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.95e3
  • 1.95e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
2.04e3
  • 2.04e3
90.90
  • 90.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
2.32e3
  • 2.32e3
89.64
  • 89.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.47e3
  • 2.47e3
  • 2.54e3
  • 2.65e3
  • 2.68e3
  • 4.17e3
88.96
  • 88.96
  • 88.65
  • 88.16
  • 88.01
  • 81.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.99e3
  • 2.99e3
86.62
  • 86.62
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
3.00e3
  • 3.00e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
3.11e3
  • 3.11e3
86.07
  • 86.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000010127.

Paralogs (same species)

Paralogy information comes from OMA : ENSCAFG00000010127.

Cross-references

EnsemblENSCAFG00000010127 (SNRPN)
HGNCHGNC:11164 (SNRPN)
EMBLAAEX03002194
Uniprot/SPTREMBLE2RPQ0, E2RPQ0_CANLF

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