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C. lupus familiaris Gene: BDNF - ENSCAFG00000010207 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000010207
NameBDNF
Descriptionbrain-derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:1033]
OrganismCanis lupus familiaris (dog)
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
3.81e3
  • 3.81e3
82.96
  • 82.96
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.14e3
  • 5.14e3
  • 1.07e4
  • 1.16e4
77.04
  • 77.04
  • 52.31
  • 48.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
5.52e3
  • 5.52e3
75.34
  • 75.34
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
5.69e3
  • 5.69e3
74.58
  • 74.58
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
6.20e3
  • 6.20e3
72.26
  • 72.26
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
6.86e3
  • 6.86e3
69.33
  • 69.33
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.09e3
  • 7.09e3
  • 9.00e3
68.29
  • 68.29
  • 59.74
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.43e3
  • 7.43e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
8.46e3
  • 8.46e3
62.15
  • 62.15
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
8.91e3
  • 8.91e3
60.14
  • 60.14
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
9.28e3
  • 9.28e3
58.51
  • 58.51
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
9.57e3
  • 9.57e3
  • 1.40e4
57.21
  • 57.21
  • 37.52
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
  • 1.08e4
52.86
  • 52.86
  • 51.92
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.06e4
  • 1.06e4
  • 1.47e4
52.79
  • 52.79
  • 34.24
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
51.78
  • 51.78
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
51.37
  • 51.37
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.14e4
  • 1.14e4
  • 1.24e4
49.03
  • 49.03
  • 44.51
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.18e4
  • 1.18e4
  • 1.44e4
47.39
  • 47.39
  • 35.75
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.19e4
  • 1.19e4
  • 1.59e4
46.86
  • 46.86
  • 28.81
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
44.66
  • 44.66
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
42.40
  • 42.40
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.29e4
  • 1.29e4
42.34
  • 42.34
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
41.87
  • 41.87
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
41.23
  • 41.23
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
  • 1.41e4
41.09
  • 41.09
  • 36.77
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.34e4
  • 1.34e4
39.90
  • 39.90
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
39.72
  • 39.72
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.42e4
  • 1.44e4
37.55
  • 37.55
  • 36.64
  • 35.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.52e4
37.42
  • 37.42
  • 32.03
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.40e4
  • 1.40e4
37.41
  • 37.41
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.40e4
  • 1.40e4
37.23
  • 37.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
  • 1.74e4
36.16
  • 36.16
  • 22.22
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.46e4
  • 1.46e4
  • 1.65e4
  • 1.72e4
34.94
  • 34.94
  • 26.27
  • 23.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
34.85
  • 34.85
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
34.49
  • 34.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
34.15
  • 34.15
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
  • 1.67e4
32.53
  • 32.53
  • 25.46
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.52e4
  • 1.52e4
32.15
  • 32.15
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
31.34
  • 31.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
29.15
  • 29.15
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
28.68
  • 28.68
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
28.14
  • 28.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
25.79
  • 25.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000010207.

Cross-references

EnsemblENSCAFG00000010207 (BDNF)
HGNCHGNC:1033 (BDNF)
EMBLAAEX03013030
Uniprot/SPTREMBLG1K2A0, G1K2A0_CANLF

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