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C. lupus familiaris Gene: SF3B1 - ENSCAFG00000010826 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000010826
NameSF3B1
Descriptionsplicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
OrganismCanis lupus familiaris (dog)
Synonym(s)hsh155, prp10, prpf10, sap155, sf3b155
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000104life cycle
396
  • 396
98.23
  • 98.23
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
490
  • 490
97.81
  • 97.81
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
738
  • 738
  • 1.25e3
96.70
  • 96.70
  • 94.40
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
742
  • 742
  • 1.85e3
96.69
  • 96.69
  • 91.72
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
754
  • 754
  • 1.37e3
  • 1.98e3
96.63
  • 96.63
  • 93.90
  • 91.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
892
  • 892
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
955
  • 955
  • 1.09e3
95.73
  • 95.73
  • 95.13
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
961
  • 961
  • 2.45e3
95.71
  • 95.71
  • 89.07
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.08e3
  • 1.08e3
  • 1.85e3
  • 2.10e3
95.19
  • 95.19
  • 91.71
  • 90.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.11e3
  • 1.11e3
  • 1.55e3
  • 5.43e3
95.04
  • 95.04
  • 93.07
  • 75.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.12e3
  • 1.12e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
94.77
  • 94.77
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.73
  • 94.73
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.20e3
  • 1.20e3
94.64
  • 94.64
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.21e3
  • 1.21e3
  • 2.57e3
94.61
  • 94.61
  • 88.49
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.28e3
  • 1.28e3
  • 1.54e3
94.26
  • 94.26
  • 93.12
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.29e3
  • 1.29e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.32e3
  • 1.32e3
  • 1.82e3
94.10
  • 94.10
  • 91.87
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.37e3
  • 1.37e3
  • 3.29e3
93.87
  • 93.87
  • 85.29
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.40e3
  • 1.40e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.42e3
  • 1.42e3
  • 1.47e3
93.65
  • 93.65
  • 93.45
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.47e3
  • 1.47e3
  • 2.05e3
93.44
  • 93.44
  • 90.85
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.49e3
  • 1.49e3
93.35
  • 93.35
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.57e3
  • 1.57e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.59e3
  • 1.59e3
  • 2.13e3
  • 2.61e3
  • 2.75e3
  • 4.06e3
92.90
  • 92.90
  • 90.48
  • 88.32
  • 87.70
  • 81.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.62e3
  • 1.62e3
92.75
  • 92.75
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
1.69e3
  • 1.69e3
92.44
  • 92.44
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.73e3
  • 1.73e3
92.29
  • 92.29
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.73e3
  • 1.73e3
  • 1.99e3
92.28
  • 92.28
  • 91.09
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.74e3
  • 1.74e3
  • 4.14e3
92.25
  • 92.25
  • 81.47
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.75e3
  • 1.75e3
92.19
  • 92.19
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.84e3
  • 1.84e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.89e3
  • 1.89e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.97e3
  • 1.97e3
91.22
  • 91.22
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.97e3
  • 1.97e3
91.21
  • 91.21
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.02e3
  • 2.02e3
  • 2.10e3
90.97
  • 90.97
  • 90.61
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
2.12e3
  • 2.12e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
2.14e3
  • 2.14e3
90.43
  • 90.43
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
2.23e3
  • 2.23e3
90.05
  • 90.05
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.37e3
  • 2.37e3
89.41
  • 89.41
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
2.39e3
  • 2.39e3
89.33
  • 89.33
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.43e3
  • 2.43e3
  • 3.53e3
89.16
  • 89.16
  • 84.22
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
2.45e3
  • 2.45e3
89.05
  • 89.05
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
2.62e3
  • 2.62e3
88.28
  • 88.28
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
2.75e3
  • 2.75e3
87.72
  • 87.72
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
2.79e3
  • 2.79e3
87.55
  • 87.55
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.85e3
  • 2.85e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
3.08e3
  • 3.08e3
86.23
  • 86.23
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
3.17e3
  • 3.17e3
85.85
  • 85.85
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
3.48e3
  • 3.48e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.75e3
  • 3.75e3
  • 3.97e3
83.22
  • 83.22
  • 82.23
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
7.84e3
  • 7.84e3
64.94
  • 64.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000010826.

Cross-references

EnsemblENSCAFG00000010826 (SF3B1)
HGNCHGNC:10768 (SF3B1)
EMBLAAEX03017984
Uniprot/SPTREMBLF1PKF6, F1PKF6_CANLF

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