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C. lupus familiaris Gene: VTI1A - ENSCAFG00000010984 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000010984
NameVTI1A
Descriptionvesicle transport through interaction with t-SNAREs 1A [Source:HGNC Symbol;Acc:HGNC:17792]
OrganismCanis lupus familiaris (dog)
Synonym(s)mvti1, vti1-rp2, vti1a
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.17e3
  • 1.17e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.17e3
  • 1.17e3
  • 1.53e3
94.77
  • 94.77
  • 93.16
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.32e3
  • 1.32e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.34e3
  • 1.34e3
  • 1.61e3
94.00
  • 94.00
  • 92.82
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.42e3
  • 1.42e3
93.66
  • 93.66
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.50e3
  • 1.50e3
93.31
  • 93.31
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.52e3
  • 1.52e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
1.53e3
  • 1.53e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.60e3
  • 1.60e3
  • 2.12e3
92.84
  • 92.84
  • 90.54
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.60e3
  • 1.60e3
  • 3.60e3
92.83
  • 92.83
  • 83.92
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.62e3
  • 1.62e3
  • 2.33e3
  • 3.98e3
92.75
  • 92.75
  • 89.57
  • 82.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.68e3
  • 1.68e3
  • 5.60e3
92.48
  • 92.48
  • 74.95
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.89e3
  • 1.89e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.90e3
  • 1.90e3
  • 1.90e3
  • 3.04e3
91.51
  • 91.51
  • 91.50
  • 86.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.90e3
  • 1.90e3
  • 2.97e3
91.50
  • 91.50
  • 86.74
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.96e3
  • 1.96e3
  • 2.05e3
  • 2.32e3
  • 3.56e3
  • 4.40e3
91.26
  • 91.26
  • 90.83
  • 89.61
  • 84.08
  • 80.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.98e3
  • 1.98e3
91.14
  • 91.14
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
2.01e3
  • 2.01e3
91.03
  • 91.03
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
2.01e3
  • 2.01e3
91.02
  • 91.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
2.04e3
  • 2.04e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
2.09e3
  • 2.09e3
90.65
  • 90.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.14e3
  • 2.14e3
  • 2.17e3
  • 2.74e3
90.44
  • 90.44
  • 90.29
  • 87.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.14e3
  • 2.14e3
  • 2.48e3
90.43
  • 90.43
  • 88.92
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.16e3
  • 2.16e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.19e3
  • 2.19e3
90.20
  • 90.20
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.20e3
  • 2.20e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
2.22e3
  • 2.22e3
90.07
  • 90.07
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
2.25e3
  • 2.25e3
89.94
  • 89.94
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
2.27e3
  • 2.27e3
89.86
  • 89.86
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
2.47e3
  • 2.47e3
88.95
  • 88.95
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
2.51e3
  • 2.51e3
88.77
  • 88.77
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
2.60e3
  • 2.60e3
88.37
  • 88.37
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
2.70e3
  • 2.70e3
  • 3.98e3
87.95
  • 87.95
  • 82.22
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.71e3
  • 2.71e3
87.87
  • 87.87
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.74e3
  • 2.74e3
  • 2.95e3
87.75
  • 87.75
  • 86.81
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
87.34
  • 87.34
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
2.91e3
  • 2.91e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
2.99e3
  • 2.99e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
3.04e3
  • 3.04e3
86.40
  • 86.40
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
3.07e3
  • 3.07e3
86.27
  • 86.27
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.07e3
  • 3.07e3
  • 3.54e3
86.26
  • 86.26
  • 84.16
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
3.37e3
  • 3.37e3
84.95
  • 84.95
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.54e3
  • 3.54e3
  • 5.28e3
84.18
  • 84.18
  • 76.41
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.56e3
  • 3.56e3
  • 3.59e3
84.08
  • 84.08
  • 83.96
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
3.70e3
  • 3.70e3
83.45
  • 83.45
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.73e3
  • 3.73e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.73e3
  • 3.73e3
  • 6.34e3
83.33
  • 83.33
  • 71.63
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
3.79e3
  • 3.79e3
83.07
  • 83.07
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
3.90e3
  • 3.90e3
82.58
  • 82.58
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
3.96e3
  • 3.96e3
82.30
  • 82.30
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
4.12e3
  • 4.12e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
4.46e3
  • 4.46e3
80.08
  • 80.08
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
4.56e3
  • 4.56e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
4.79e3
  • 4.79e3
78.59
  • 78.59
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.66e3
  • 5.66e3
  • 6.03e3
74.67
  • 74.67
  • 73.02
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria2 species2 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000010984.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000010984.

Cross-references

EnsemblENSCAFG00000010984 (VTI1A)
HGNCHGNC:17792 (VTI1A)
EMBLAAEX03015533
Uniprot/SPTREMBLE2R276, E2R276_CANLF, J9NRK3, J9NRK3_CANLF

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