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C. lupus familiaris Gene: SCN2A - ENSCAFG00000011130 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000011130
NameSCN2A
Descriptionsodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
OrganismCanis lupus familiaris (dog)
Synonym(s)hbsci, hbscii, nav1.2, scn2a1, scn2a2
Orthologs(s)24 orthologs
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.14e3
  • 1.14e3
  • 2.10e3
94.91
  • 94.91
  • 90.63
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.88e3
  • 1.88e3
91.59
  • 91.59
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
2.52e3
  • 2.52e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
3.76e3
  • 3.76e3
83.19
  • 83.19
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
5.97e3
  • 5.97e3
73.31
  • 73.31
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
8.67e3
  • 8.67e3
61.22
  • 61.22
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
8.80e3
  • 8.80e3
60.65
  • 60.65
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.04e4
  • 1.04e4
  • 1.06e4
53.51
  • 53.51
  • 52.63
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.11e4
  • 1.11e4
50.21
  • 50.21
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
41.81
  • 41.81
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.39e4
  • 1.39e4
  • 1.43e4
  • 1.52e4
37.64
  • 37.64
  • 36.15
  • 32.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
34.93
  • 34.93
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
33.94
  • 33.94
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
1.50e4
  • 1.50e4
33.14
  • 33.14
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
32.84
  • 32.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
  • 1.70e4
31.28
  • 31.28
  • 24.06
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 2.08e4
30.10
  • 30.10
  • 7.15
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.58e4
  • 1.58e4
  • 1.60e4
29.16
  • 29.16
  • 28.55
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
  • 1.81e4
27.26
  • 27.26
  • 18.85
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
  • 1.74e4
27.19
  • 27.19
  • 22.25
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 1.70e4
26.65
  • 26.65
  • 23.77
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000011130.

Paralogs (same species)

Cross-references

EnsemblENSCAFG00000011130 (SCN2A)
HGNCHGNC:10588 (SCN2A)
EMBLAAEX03017728
Uniprot/SPTREMBLE2R036, E2R036_CANLF

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