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C. lupus familiaris Gene: VAPB - ENSCAFG00000012110 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000012110
NameVAPB
DescriptionVAMP (vesicle-associated membrane protein)-associated protein B and C [Source:HGNC Symbol;Acc:HGNC:12649]
OrganismCanis lupus familiaris (dog)
Synonym(s)als8, vap-b, vap-c
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
769
  • 769
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
823
  • 823
  • 1.45e3
96.32
  • 96.32
  • 93.53
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
834
  • 834
96.27
  • 96.27
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
839
  • 839
  • 1.27e3
96.25
  • 96.25
  • 94.34
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
924
  • 924
95.87
  • 95.87
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
931
  • 931
95.84
  • 95.84
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
950
  • 950
95.76
  • 95.76
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
963
  • 963
  • 1.29e3
  • 1.78e3
95.70
  • 95.70
  • 94.24
  • 92.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.00e3
  • 1.00e3
  • 1.12e3
95.53
  • 95.53
  • 94.99
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.01e3
  • 1.01e3
  • 1.33e3
95.50
  • 95.50
  • 94.06
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.03e3
  • 1.03e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.09e3
  • 1.09e3
95.12
  • 95.12
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.10e3
  • 1.10e3
95.11
  • 95.11
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.11e3
  • 1.11e3
  • 1.66e3
95.02
  • 95.02
  • 92.57
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.12e3
  • 1.12e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.13e3
  • 1.13e3
94.96
  • 94.96
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.13e3
  • 1.13e3
94.95
  • 94.95
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.16e3
  • 1.16e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.17e3
  • 1.17e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.26e3
  • 1.26e3
  • 1.59e3
94.35
  • 94.35
  • 92.88
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.27e3
  • 1.27e3
94.33
  • 94.33
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.30e3
  • 1.30e3
94.18
  • 94.18
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.31e3
  • 1.31e3
  • 1.49e3
  • 1.60e3
94.13
  • 94.13
  • 93.33
  • 92.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.32e3
  • 1.32e3
94.10
  • 94.10
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.32e3
  • 1.32e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.32e3
  • 1.32e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
  • 2.83e3
94.08
  • 94.08
  • 87.34
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.35e3
  • 1.35e3
  • 1.55e3
93.99
  • 93.99
  • 93.09
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.37e3
  • 1.37e3
93.90
  • 93.90
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.39e3
  • 1.39e3
93.77
  • 93.77
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.43e3
  • 1.43e3
93.59
  • 93.59
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.45e3
  • 1.45e3
93.52
  • 93.52
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.47e3
  • 1.47e3
  • 2.05e3
93.43
  • 93.43
  • 90.82
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.49e3
  • 1.49e3
  • 1.58e3
93.35
  • 93.35
  • 92.95
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.52e3
  • 1.52e3
  • 1.64e3
93.21
  • 93.21
  • 92.67
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.56e3
  • 1.56e3
93.01
  • 93.01
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.57e3
  • 1.57e3
  • 2.68e3
92.97
  • 92.97
  • 88.03
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.61e3
  • 1.61e3
  • 1.61e3
92.81
  • 92.81
  • 92.79
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.64e3
  • 1.64e3
92.69
  • 92.69
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.65e3
  • 1.65e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.66e3
  • 1.66e3
  • 2.36e3
92.59
  • 92.59
  • 89.46
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.68e3
  • 1.68e3
  • 1.68e3
  • 1.73e3
  • 1.95e3
  • 2.02e3
92.51
  • 92.51
  • 92.48
  • 92.28
  • 91.30
  • 90.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.75e3
  • 1.75e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.83e3
  • 1.83e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.91e3
  • 1.91e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.94e3
  • 1.94e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.97e3
  • 1.97e3
91.18
  • 91.18
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.00e3
  • 2.00e3
91.04
  • 91.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.02e3
  • 2.02e3
  • 2.06e3
  • 2.17e3
90.95
  • 90.95
  • 90.77
  • 90.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.90e3
  • 2.90e3
87.06
  • 87.06
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
3.04e3
  • 3.04e3
86.41
  • 86.41
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
3.30e3
  • 3.30e3
85.23
  • 85.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
4.18e3
  • 4.18e3
81.30
  • 81.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species15 genesCompare expression
Mammalia14 species16 genesCompare expression
Amniota16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000012110.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000012110.

Cross-references

EnsemblENSCAFG00000012110 (VAPB)
HGNCHGNC:12649 (VAPB)
EMBLAAEX03014049
Uniprot/SPTREMBLE2RRB7, E2RRB7_CANLF

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