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C. lupus familiaris Gene: SMCO3 - ENSCAFG00000012980 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000012980
NameSMCO3
Descriptionsingle-pass membrane protein with coiled-coil domains 3 [Source:HGNC Symbol;Acc:HGNC:34401]
OrganismCanis lupus familiaris (dog)
Synonym(s)c12orf69, c27h12orf69, loc440087
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
7.07e3
  • 7.07e3
68.39
  • 68.39
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.68e3
  • 7.68e3
  • 1.51e4
65.65
  • 65.65
  • 32.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.82e3
  • 7.82e3
  • 1.66e4
65.04
  • 65.04
  • 25.81
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
8.99e3
  • 8.99e3
  • 1.11e4
59.79
  • 59.79
  • 50.56
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
9.12e3
  • 9.12e3
  • 1.51e4
59.22
  • 59.22
  • 32.35
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
9.12e3
  • 9.12e3
59.21
  • 59.21
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
9.46e3
  • 9.46e3
  • 9.51e3
57.70
  • 57.70
  • 57.47
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
9.59e3
  • 9.59e3
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.60e3
  • 9.60e3
  • 1.34e4
  • 1.48e4
57.05
  • 57.05
  • 40.16
  • 33.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.75e3
  • 9.75e3
  • 1.43e4
  • 2.03e4
56.40
  • 56.40
  • 35.87
  • 9.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
9.78e3
  • 9.78e3
56.29
  • 56.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.89e3
  • 9.89e3
  • 1.27e4
  • 1.32e4
  • 1.37e4
  • 1.53e4
55.78
  • 55.78
  • 43.43
  • 40.83
  • 38.58
  • 31.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
9.94e3
  • 9.94e3
  • 1.43e4
55.53
  • 55.53
  • 36.06
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.00e4
  • 1.00e4
55.18
  • 55.18
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.01e4
  • 1.01e4
54.72
  • 54.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
54.33
  • 54.33
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.23e4
53.86
  • 53.86
  • 44.82
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.03e4
  • 1.03e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.04e4
  • 1.04e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
53.48
  • 53.48
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
53.23
  • 53.23
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.07e4
  • 1.07e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
51.78
  • 51.78
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
51.46
  • 51.46
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.11e4
  • 1.11e4
  • 1.15e4
50.18
  • 50.18
  • 48.71
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.12e4
  • 1.12e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.13e4
  • 1.13e4
49.27
  • 49.27
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.15e4
  • 1.15e4
  • 1.25e4
48.52
  • 48.52
  • 44.31
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
  • 1.41e4
48.20
  • 48.20
  • 37.12
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
47.34
  • 47.34
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.19e4
  • 1.19e4
  • 1.34e4
46.77
  • 46.77
  • 40.13
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.55e4
45.48
  • 45.48
  • 30.60
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
  • 1.44e4
45.48
  • 45.48
  • 35.80
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.23e4
  • 1.23e4
45.19
  • 45.19
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.25e4
  • 1.25e4
44.17
  • 44.17
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
  • 1.26e4
43.99
  • 43.99
  • 43.46
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.46e4
43.63
  • 43.63
  • 43.60
  • 34.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
43.13
  • 43.13
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.28e4
  • 1.28e4
42.69
  • 42.69
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
42.43
  • 42.43
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
41.01
  • 41.01
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
39.60
  • 39.60
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
38.62
  • 38.62
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
37.96
  • 37.96
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
36.88
  • 36.88
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
36.86
  • 36.86
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.42e4
  • 1.42e4
36.55
  • 36.55
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
36.19
  • 36.19
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
34.32
  • 34.32
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
33.73
  • 33.73
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.53e4
  • 1.53e4
  • 1.53e4
31.75
  • 31.75
  • 31.60
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
30.83
  • 30.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria9 species10 genesCompare expression
Theria10 species11 genesCompare expression
Amniota12 species13 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000012980.

Cross-references

EnsemblENSCAFG00000012980 (SMCO3)
HGNCHGNC:34401 (SMCO3)
EMBLAAEX03015240
Uniprot/SPTREMBLE2RDW8, E2RDW8_CANLF

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