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C. lupus familiaris Gene: YBX3 - ENSCAFG00000013401 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000013401
NameYBX3
DescriptionY-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428]
OrganismCanis lupus familiaris (dog)
Synonym(s)csda, csda1, dbpa, zonab
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
35.0
  • 35.0
99.85
  • 99.85
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
40.0
  • 40.0
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
41.0
  • 41.0
  • 42.0
99.82
  • 99.82
  • 99.82
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
56.0
  • 56.0
99.75
  • 99.75
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
65.5
  • 65.5
  • 900
99.71
  • 99.71
  • 95.98
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
131
  • 131
  • 139
99.42
  • 99.42
  • 99.38
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
164
  • 164
  • 401
99.27
  • 99.27
  • 98.21
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
175
  • 175
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
184
  • 184
99.18
  • 99.18
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
230
  • 230
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
246
  • 246
  • 493
98.90
  • 98.90
  • 97.80
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
278
  • 278
  • 3.74e3
98.76
  • 98.76
  • 83.29
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
305
  • 305
98.64
  • 98.64
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
320
  • 320
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
322
  • 322
98.56
  • 98.56
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
334
  • 334
  • 508
98.51
  • 98.51
  • 97.73
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
368
  • 368
  • 711
98.36
  • 98.36
  • 96.82
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
446
  • 446
  • 693
  • 2.08e3
98.01
  • 98.01
  • 96.91
  • 90.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
556
  • 556
  • 708
  • 947
97.52
  • 97.52
  • 96.84
  • 95.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
577
  • 577
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
616
  • 616
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
636
  • 636
  • 652
  • 933
  • 1.28e3
  • 1.81e3
97.16
  • 97.16
  • 97.09
  • 95.83
  • 94.26
  • 91.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
726
  • 726
  • 1.56e3
96.76
  • 96.76
  • 93.03
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
733
  • 733
  • 1.34e3
96.73
  • 96.73
  • 94.02
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
751
  • 751
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
751
  • 751
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
753
  • 753
96.64
  • 96.64
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
824
  • 824
96.32
  • 96.32
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
839
  • 839
96.25
  • 96.25
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
915
  • 915
95.91
  • 95.91
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
990
  • 990
95.58
  • 95.58
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.08e3
  • 1.08e3
  • 1.14e3
95.19
  • 95.19
  • 94.91
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.13e3
  • 1.13e3
94.94
  • 94.94
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.17e3
  • 1.17e3
  • 1.77e3
94.79
  • 94.79
  • 92.11
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.19e3
  • 1.19e3
94.70
  • 94.70
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.25e3
  • 1.25e3
94.40
  • 94.40
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.30e3
  • 1.30e3
  • 1.36e3
  • 1.72e3
94.20
  • 94.20
  • 93.93
  • 92.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.63e3
  • 1.63e3
92.72
  • 92.72
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.69e3
  • 1.69e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.78e3
  • 1.78e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.94e3
  • 1.94e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.23e3
  • 2.23e3
  • 3.13e3
90.01
  • 90.01
  • 85.99
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
2.40e3
  • 2.40e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
2.65e3
  • 2.65e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.96e3
  • 2.96e3
86.77
  • 86.77
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.05e3
  • 3.05e3
  • 4.94e3
86.35
  • 86.35
  • 77.91
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.62e3
  • 3.62e3
83.82
  • 83.82
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
4.12e3
  • 4.12e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.76e3
  • 4.76e3
  • 5.99e3
78.72
  • 78.72
  • 73.21
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
4.95e3
  • 4.95e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
5.78e3
  • 5.78e3
74.15
  • 74.15
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.51e3
  • 6.51e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
7.09e3
  • 7.09e3
68.32
  • 68.32
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
7.68e3
  • 7.68e3
65.67
  • 65.67
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
7.73e3
  • 7.73e3
65.45
  • 65.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000013401.

Cross-references

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