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C. lupus familiaris Gene: RTN1 - ENSCAFG00000015578 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000015578
NameRTN1
Descriptionreticulon 1 [Source:HGNC Symbol;Acc:HGNC:10467]
OrganismCanis lupus familiaris (dog)
Synonym(s)nsp
Orthologs(s)14 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
73.0
  • 73.0
  • 80.5
99.68
  • 99.68
  • 99.64
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
74.0
  • 74.0
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
75.0
  • 75.0
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
146
  • 146
99.35
  • 99.35
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
269
  • 269
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
341
  • 341
98.48
  • 98.48
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
364
  • 364
98.38
  • 98.38
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
417
  • 417
  • 615
98.14
  • 98.14
  • 97.26
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
481
  • 481
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
879
  • 879
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.02e3
  • 1.02e3
  • 8.35e3
  • 1.08e4
95.43
  • 95.43
  • 62.68
  • 51.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.49e3
  • 1.49e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.91e3
  • 2.91e3
  • 3.62e3
87.01
  • 87.01
  • 83.82
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
3.27e3
  • 3.27e3
85.36
  • 85.36
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.40e3
  • 3.40e3
  • 5.58e3
84.82
  • 84.82
  • 75.04
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
4.59e3
  • 4.59e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
5.57e3
  • 5.57e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.15e3
  • 6.15e3
  • 1.21e4
72.48
  • 72.48
  • 45.91
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.68e3
  • 6.68e3
  • 8.39e3
70.12
  • 70.12
  • 62.51
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
6.88e3
  • 6.88e3
  • 1.39e4
  • 1.39e4
  • 1.58e4
69.25
  • 69.25
  • 37.94
  • 37.73
  • 29.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
7.07e3
  • 7.07e3
68.39
  • 68.39
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
9.56e3
  • 9.56e3
  • 1.39e4
57.26
  • 57.26
  • 37.68
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
9.69e3
  • 9.69e3
56.69
  • 56.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
9.70e3
  • 9.70e3
56.64
  • 56.64
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.03e4
  • 1.03e4
  • 1.12e4
54.00
  • 54.00
  • 49.74
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
  • 1.35e4
53.99
  • 53.99
  • 39.85
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.09e4
  • 1.09e4
  • 1.32e4
51.28
  • 51.28
  • 40.83
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
50.49
  • 50.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
1.18e4
  • 1.18e4
47.06
  • 47.06
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
  • 1.47e4
  • 1.49e4
46.67
  • 46.67
  • 34.29
  • 33.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.22e4
  • 1.22e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
  • 1.32e4
44.89
  • 44.89
  • 41.02
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.25e4
  • 1.25e4
44.08
  • 44.08
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
42.85
  • 42.85
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
  • 1.41e4
41.02
  • 41.02
  • 36.87
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.32e4
  • 1.32e4
40.75
  • 40.75
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.38e4
  • 1.38e4
38.34
  • 38.34
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
38.05
  • 38.05
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.39e4
  • 1.39e4
37.82
  • 37.82
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
37.48
  • 37.48
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.49e4
37.31
  • 37.31
  • 33.55
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
  • 1.51e4
  • 1.57e4
37.04
  • 37.04
  • 32.64
  • 29.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.43e4
  • 1.43e4
36.13
  • 36.13
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
33.68
  • 33.68
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.49e4
  • 1.49e4
33.37
  • 33.37
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
32.46
  • 32.46
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.52e4
  • 1.52e4
32.06
  • 32.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria2 species2 genesCompare expression
Boreoeutheria5 species5 genesCompare expression
Mammalia6 species6 genesCompare expression
Tetrapoda7 species7 genesCompare expression
Euteleostomi8 species9 genesCompare expression
Bilateria13 species14 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000015578.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000015578.

Cross-references

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