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C. lupus familiaris Gene: RDH12 - ENSCAFG00000016446 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000016446
NameRDH12
Descriptionretinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:HGNC:19977]
OrganismCanis lupus familiaris (dog)
Synonym(s)flj30273, lca13, rp53, sdr7c2
Orthologs(s)15 orthologs
Paralog(s)20 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.57e3
  • 1.57e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.80e3
  • 1.80e3
91.95
  • 91.95
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.85e3
  • 2.85e3
  • 1.50e4
87.27
  • 87.27
  • 32.99
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.27e3
  • 4.27e3
  • 1.11e4
80.89
  • 80.89
  • 50.16
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
4.30e3
  • 4.30e3
80.78
  • 80.78
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
4.47e3
  • 4.47e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.11e3
  • 7.11e3
  • 1.19e4
  • 1.29e4
68.19
  • 68.19
  • 46.76
  • 42.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
8.73e3
  • 8.73e3
60.99
  • 60.99
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
52.58
  • 52.58
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.14e4
  • 1.14e4
49.19
  • 49.19
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
48.81
  • 48.81
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.26e4
  • 1.26e4
43.87
  • 43.87
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
43.84
  • 43.84
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.30e4
  • 1.30e4
42.04
  • 42.04
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.39e4
  • 1.39e4
38.02
  • 38.02
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.73e4
37.57
  • 37.57
  • 22.68
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
  • 1.55e4
37.12
  • 37.12
  • 30.57
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
33.00
  • 33.00
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
32.99
  • 32.99
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 2.08e4
32.37
  • 32.37
  • 7.15
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
32.33
  • 32.33
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.53e4
  • 1.53e4
31.56
  • 31.56
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
31.47
  • 31.47
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
  • 1.64e4
  • 1.64e4
31.14
  • 31.14
  • 26.64
  • 26.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 2.08e4
30.19
  • 30.19
  • 7.08
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
29.49
  • 29.49
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
28.53
  • 28.53
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.47
  • 28.47
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.61e4
  • 1.61e4
28.17
  • 28.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
27.54
  • 27.54
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
27.47
  • 27.47
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
27.42
  • 27.42
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
26.77
  • 26.77
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
24.74
  • 24.74
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
22.94
  • 22.94
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.80e4
  • 1.80e4
19.33
  • 19.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000016446.

Paralogs (same species)

Cross-references

EnsemblENSCAFG00000016446 (RDH12)
HGNCHGNC:19977 (RDH12)
EMBLAAEX03005799
Uniprot/SPTREMBLF1P956, F1P956_CANLF

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