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C. lupus familiaris Gene: COL1A1 - ENSCAFG00000017018 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000017018
NameCOL1A1
Descriptioncollagen alpha-1(I) chain precursor [Source:RefSeq peptide;Acc:NP_001003090]
OrganismCanis lupus familiaris (dog)
Orthologs(s)17 orthologs
Paralog(s)361 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
68.0
  • 68.0
  • 466
99.70
  • 99.70
  • 97.92
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
262
  • 262
98.83
  • 98.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
275
  • 275
  • 4.77e3
98.77
  • 98.77
  • 78.69
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
324
  • 324
  • 1.62e3
  • 3.21e3
98.56
  • 98.56
  • 92.76
  • 85.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
374
  • 374
  • 9.04e3
98.33
  • 98.33
  • 59.57
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
405
  • 405
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
448
  • 448
98.00
  • 98.00
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
482
  • 482
  • 1.08e3
97.85
  • 97.85
  • 95.18
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
497
  • 497
  • 4.51e3
97.78
  • 97.78
  • 79.85
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
506
  • 506
  • 6.08e3
97.74
  • 97.74
  • 72.82
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
534
  • 534
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
588
  • 588
  • 1.29e3
97.37
  • 97.37
  • 94.23
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
685
  • 685
  • 1.09e4
96.94
  • 96.94
  • 51.09
AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
690
  • 690
96.92
  • 96.92
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
714
  • 714
  • 2.71e3
96.81
  • 96.81
  • 87.87
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
782
  • 782
  • 2.73e3
96.51
  • 96.51
  • 87.80
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
951
  • 951
  • 5.42e3
95.75
  • 95.75
  • 75.77
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
  • 2.28e3
94.33
  • 94.33
  • 89.83
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
93.72
  • 93.72
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.58e3
  • 1.58e3
92.95
  • 92.95
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.60e3
  • 1.60e3
92.84
  • 92.84
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.65e3
  • 1.65e3
92.65
  • 92.65
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
1.70e3
  • 1.70e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
2.20e3
  • 2.20e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.53e3
  • 2.53e3
  • 4.75e3
  • 8.40e3
88.70
  • 88.70
  • 78.75
  • 62.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
2.81e3
  • 2.81e3
87.45
  • 87.45
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
3.14e3
  • 3.14e3
85.98
  • 85.98
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
4.03e3
  • 4.03e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.08e3
  • 4.08e3
  • 5.43e3
81.75
  • 81.75
  • 75.73
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
4.22e3
  • 4.22e3
81.15
  • 81.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
4.28e3
  • 4.28e3
  • 8.50e3
  • 1.03e4
80.86
  • 80.86
  • 62.01
  • 54.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.50e3
  • 4.50e3
  • 5.95e3
  • 7.04e3
  • 7.40e3
  • 8.02e3
79.90
  • 79.90
  • 73.41
  • 68.53
  • 66.92
  • 64.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
4.57e3
  • 4.57e3
79.56
  • 79.56
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
4.77e3
  • 4.77e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
5.49e3
  • 5.49e3
75.47
  • 75.47
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.25e3
  • 6.25e3
  • 7.07e3
72.04
  • 72.04
  • 68.38
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.29e3
  • 6.29e3
  • 1.16e4
71.88
  • 71.88
  • 48.20
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.34e3
  • 6.34e3
71.65
  • 71.65
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
6.44e3
  • 6.44e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
6.45e3
  • 6.45e3
71.14
  • 71.14
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
6.62e3
  • 6.62e3
70.42
  • 70.42
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
7.17e3
  • 7.17e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
7.32e3
  • 7.32e3
67.28
  • 67.28
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
9.66e3
  • 9.66e3
56.81
  • 56.81
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.00e4
  • 1.00e4
55.28
  • 55.28
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.01e4
  • 1.01e4
  • 1.30e4
54.84
  • 54.84
  • 41.89
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
50.36
  • 50.36
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
1.17e4
  • 1.17e4
47.55
  • 47.55
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
46.80
  • 46.80
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.22e4
  • 1.22e4
45.53
  • 45.53
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
45.25
  • 45.25
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
43.89
  • 43.89
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.28e4
  • 1.28e4
42.82
  • 42.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000017018.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Bilateria4 genesCompare expression
Eukaryota361 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000017018.

Cross-references

EnsemblENSCAFG00000017018 (COL1A1)
EMBLAAEX03006535
Uniprot/SPTREMBLF1Q3I5, F1Q3I5_CANLF

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