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C. lupus familiaris Gene: SLIRP - ENSCAFG00000017230 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000017230
NameSLIRP
DescriptionSRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:HGNC:20495]
OrganismCanis lupus familiaris (dog)
Synonym(s)c14orf156, dc50
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
206
  • 206
  • 484
99.08
  • 99.08
  • 97.84
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
208
  • 208
  • 283
99.07
  • 99.07
  • 98.74
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
247
  • 247
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
249
  • 249
  • 267
98.89
  • 98.89
  • 98.81
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
251
  • 251
98.88
  • 98.88
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
268
  • 268
98.81
  • 98.81
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
280
  • 280
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
283
  • 283
  • 359
98.74
  • 98.74
  • 98.40
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
321
  • 321
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
334
  • 334
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
338
  • 338
  • 383
98.49
  • 98.49
  • 98.29
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
342
  • 342
98.48
  • 98.48
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
345
  • 345
98.46
  • 98.46
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
362
  • 362
  • 404
98.39
  • 98.39
  • 98.20
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
373
  • 373
  • 523
  • 564
98.34
  • 98.34
  • 97.66
  • 97.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
373
  • 373
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
378
  • 378
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
387
  • 387
  • 877
98.27
  • 98.27
  • 96.08
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
395
  • 395
  • 594
98.24
  • 98.24
  • 97.35
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
398
  • 398
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
400
  • 400
  • 539
98.22
  • 98.22
  • 97.59
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
406
  • 406
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
408
  • 408
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
415
  • 415
  • 930
98.15
  • 98.15
  • 95.85
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
417
  • 417
98.14
  • 98.14
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
437
  • 437
  • 878
  • 1.01e3
98.05
  • 98.05
  • 96.08
  • 95.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
452
  • 452
  • 944
  • 1.42e3
97.98
  • 97.98
  • 95.78
  • 93.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
484
  • 484
97.84
  • 97.84
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
495
  • 495
  • 619
97.79
  • 97.79
  • 97.24
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
495
  • 495
97.79
  • 97.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
513
  • 513
  • 538
  • 565
  • 613
  • 1.00e3
97.71
  • 97.71
  • 97.60
  • 97.48
  • 97.26
  • 95.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
519
  • 519
  • 1.45e3
97.68
  • 97.68
  • 93.51
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
521
  • 521
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
532
  • 532
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
537
  • 537
97.60
  • 97.60
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
549
  • 549
  • 672
97.55
  • 97.55
  • 97.00
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
570
  • 570
97.46
  • 97.46
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
574
  • 574
97.44
  • 97.44
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
580
  • 580
97.41
  • 97.41
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
588
  • 588
97.37
  • 97.37
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
605
  • 605
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
612
  • 612
97.27
  • 97.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
627
  • 627
  • 656
97.20
  • 97.20
  • 97.07
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
627
  • 627
97.20
  • 97.20
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
643
  • 643
  • 1.02e3
97.13
  • 97.13
  • 95.47
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
664
  • 664
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
809
  • 809
96.39
  • 96.39
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
812
  • 812
96.37
  • 96.37
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
827
  • 827
96.31
  • 96.31
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.06e3
  • 1.06e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.50e3
  • 1.50e3
93.31
  • 93.31
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
2.35e3
  • 2.35e3
89.52
  • 89.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000017230.

Cross-references

EnsemblENSCAFG00000017230 (SLIRP)
HGNCHGNC:20495 (SLIRP)
EMBLAAEX03005881
Uniprot/SPTREMBLE2RSQ3, E2RSQ3_CANLF

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