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C. lupus familiaris Gene: CSTF2 - ENSCAFG00000017551 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000017551
NameCSTF2
Descriptioncleavage stimulation factor, 3' pre-RNA, subunit 2 [Source:HGNC Symbol;Acc:HGNC:2484]
OrganismCanis lupus familiaris (dog)
Synonym(s)cstf-64
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.83e3
  • 3.83e3
  • 8.41e3
82.88
  • 82.88
  • 62.38
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.34e3
  • 5.34e3
  • 9.22e3
  • 1.03e4
76.12
  • 76.12
  • 58.77
  • 53.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
5.34e3
  • 5.34e3
  • 6.58e3
76.12
  • 76.12
  • 70.59
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
5.62e3
  • 5.62e3
74.89
  • 74.89
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
5.64e3
  • 5.64e3
74.77
  • 74.77
AEIR
  • AEIR
UBERON:0000059large intestine
  • UBERON:0000113post-juvenile adult stage
5.64e3
  • 5.64e3
74.77
  • 74.77
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
6.10e3
  • 6.10e3
72.74
  • 72.74
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
6.14e3
  • 6.14e3
72.54
  • 72.54
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.19e3
  • 6.19e3
  • 1.04e4
72.32
  • 72.32
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
6.38e3
  • 6.38e3
71.49
  • 71.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
6.64e3
  • 6.64e3
  • 9.67e3
70.30
  • 70.30
  • 56.75
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.75e3
  • 6.75e3
  • 7.09e3
  • 8.07e3
69.81
  • 69.81
  • 68.32
  • 63.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
6.76e3
  • 6.76e3
69.79
  • 69.79
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.80e3
  • 6.80e3
  • 7.05e3
69.60
  • 69.60
  • 68.47
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
6.86e3
  • 6.86e3
69.33
  • 69.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.86e3
  • 6.86e3
  • 7.73e3
  • 7.89e3
  • 8.67e3
  • 9.64e3
69.33
  • 69.33
  • 65.42
  • 64.73
  • 61.23
  • 56.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
6.88e3
  • 6.88e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
6.92e3
  • 6.92e3
69.08
  • 69.08
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
7.00e3
  • 7.00e3
  • 8.93e3
68.70
  • 68.70
  • 60.08
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
7.02e3
  • 7.02e3
68.61
  • 68.61
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
7.08e3
  • 7.08e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
7.10e3
  • 7.10e3
68.25
  • 68.25
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.23e3
  • 7.23e3
67.67
  • 67.67
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.25e3
  • 7.25e3
  • 7.64e3
67.59
  • 67.59
  • 65.84
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
7.38e3
  • 7.38e3
67.02
  • 67.02
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
66.86
  • 66.86
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
7.56e3
  • 7.56e3
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.73e3
  • 7.73e3
  • 8.31e3
65.42
  • 65.42
  • 62.85
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.73e3
  • 7.73e3
  • 8.58e3
  • 9.32e3
65.42
  • 65.42
  • 61.63
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
7.90e3
  • 7.90e3
64.67
  • 64.67
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
8.18e3
  • 8.18e3
  • 8.39e3
63.42
  • 63.42
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.19e3
  • 8.19e3
  • 8.63e3
63.40
  • 63.40
  • 61.41
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
8.30e3
  • 8.30e3
62.89
  • 62.89
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
8.34e3
  • 8.34e3
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
8.45e3
  • 8.45e3
62.21
  • 62.21
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
8.51e3
  • 8.51e3
61.95
  • 61.95
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
8.53e3
  • 8.53e3
61.86
  • 61.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
8.60e3
  • 8.60e3
  • 9.40e3
61.54
  • 61.54
  • 57.98
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
8.77e3
  • 8.77e3
60.77
  • 60.77
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
8.97e3
  • 8.97e3
59.91
  • 59.91
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.06e3
  • 9.06e3
  • 9.57e3
59.48
  • 59.48
  • 57.21
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
9.10e3
  • 9.10e3
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
9.11e3
  • 9.11e3
59.25
  • 59.25
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
9.13e3
  • 9.13e3
59.19
  • 59.19
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
9.16e3
  • 9.16e3
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
9.18e3
  • 9.18e3
58.95
  • 58.95
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.22e3
  • 9.22e3
  • 1.02e4
58.78
  • 58.78
  • 54.17
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
9.23e3
  • 9.23e3
58.74
  • 58.74
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
9.42e3
  • 9.42e3
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
9.48e3
  • 9.48e3
  • 9.84e3
57.62
  • 57.62
  • 56.02
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
9.80e3
  • 9.80e3
56.17
  • 56.17
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.00e4
  • 1.00e4
55.15
  • 55.15
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
54.37
  • 54.37
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
52.39
  • 52.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000017551.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000017551.

Cross-references

EnsemblENSCAFG00000017551 (CSTF2)
HGNCHGNC:2484 (CSTF2)
EMBLAAEX03026714
Uniprot/SPTREMBLE2RP40, E2RP40_CANLF, J9NX69, J9NX69_CANLF

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