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C. lupus familiaris Gene: SLC39A6 - ENSCAFG00000017854 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000017854
NameSLC39A6
Descriptionsolute carrier family 39 (zinc transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:18607]
OrganismCanis lupus familiaris (dog)
Synonym(s)liv-1
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.73
  • 94.73
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
1.51e3
  • 1.51e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.59e3
  • 1.59e3
92.88
  • 92.88
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.29e3
  • 2.29e3
  • 2.56e3
89.77
  • 89.77
  • 88.58
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.33e3
  • 2.33e3
  • 3.21e3
89.60
  • 89.60
  • 85.67
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.42e3
  • 2.42e3
89.18
  • 89.18
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.43e3
  • 2.43e3
  • 3.49e3
89.12
  • 89.12
  • 84.39
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.64e3
  • 2.64e3
  • 6.17e3
88.21
  • 88.21
  • 72.43
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.66e3
  • 2.66e3
88.10
  • 88.10
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.75e3
  • 2.75e3
  • 5.04e3
  • 5.65e3
87.71
  • 87.71
  • 77.47
  • 74.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
3.01e3
  • 3.01e3
86.54
  • 86.54
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.15e3
  • 3.15e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
3.19e3
  • 3.19e3
85.76
  • 85.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
3.34e3
  • 3.34e3
  • 6.17e3
85.06
  • 85.06
  • 72.42
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.41e3
  • 3.41e3
84.76
  • 84.76
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
3.53e3
  • 3.53e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.62e3
  • 3.62e3
  • 4.11e3
83.81
  • 83.81
  • 81.64
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.70e3
  • 3.70e3
  • 3.98e3
83.47
  • 83.47
  • 82.19
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.95e3
  • 3.95e3
82.36
  • 82.36
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
4.05e3
  • 4.05e3
81.88
  • 81.88
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
4.15e3
  • 4.15e3
81.46
  • 81.46
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
4.16e3
  • 4.16e3
81.40
  • 81.40
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.17e3
  • 4.17e3
  • 4.93e3
  • 7.97e3
81.37
  • 81.37
  • 77.94
  • 64.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
4.32e3
  • 4.32e3
80.70
  • 80.70
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.32e3
  • 4.32e3
  • 5.71e3
80.69
  • 80.69
  • 74.48
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
4.33e3
  • 4.33e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
4.37e3
  • 4.37e3
80.44
  • 80.44
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
4.47e3
  • 4.47e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
4.59e3
  • 4.59e3
79.47
  • 79.47
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.68e3
  • 4.68e3
  • 5.51e3
79.09
  • 79.09
  • 75.35
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.82e3
  • 4.82e3
  • 5.68e3
  • 7.78e3
78.47
  • 78.47
  • 74.62
  • 65.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
5.22e3
  • 5.22e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
5.23e3
  • 5.23e3
76.63
  • 76.63
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.25e3
  • 5.25e3
  • 6.81e3
76.54
  • 76.54
  • 69.55
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
5.32e3
  • 5.32e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
5.37e3
  • 5.37e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
5.41e3
  • 5.41e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
5.43e3
  • 5.43e3
75.72
  • 75.72
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
5.52e3
  • 5.52e3
  • 5.74e3
75.30
  • 75.30
  • 74.34
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.53e3
  • 5.53e3
  • 6.22e3
75.29
  • 75.29
  • 72.17
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
5.62e3
  • 5.62e3
74.88
  • 74.88
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
5.68e3
  • 5.68e3
74.61
  • 74.61
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.75e3
  • 5.75e3
  • 6.47e3
74.29
  • 74.29
  • 71.08
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
5.88e3
  • 5.88e3
  • 9.62e3
73.72
  • 73.72
  • 56.97
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
6.33e3
  • 6.33e3
71.69
  • 71.69
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
6.42e3
  • 6.42e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.60e3
  • 6.60e3
70.50
  • 70.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
6.72e3
  • 6.72e3
69.94
  • 69.94
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
6.94e3
  • 6.94e3
68.96
  • 68.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.09e3
  • 7.09e3
  • 8.69e3
  • 8.90e3
  • 1.04e4
  • 1.08e4
68.29
  • 68.29
  • 61.15
  • 60.23
  • 53.45
  • 51.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
7.86e3
  • 7.86e3
64.88
  • 64.88
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
8.90e3
  • 8.90e3
60.21
  • 60.21
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.42e3
  • 9.42e3
57.89
  • 57.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000017854.

Cross-references

EnsemblENSCAFG00000017854 (SLC39A6)
HGNCHGNC:18607 (SLC39A6)
EMBLAAEX03005406
Uniprot/SPTREMBLE2RMA6, E2RMA6_CANLF

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