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C. lupus familiaris Gene: RDH8 - ENSCAFG00000017955 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000017955
NameRDH8
Descriptionretinol dehydrogenase 8 (all-trans) [Source:HGNC Symbol;Acc:HGNC:14423]
OrganismCanis lupus familiaris (dog)
Synonym(s)prrdh, sdr28c2
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
6.97e3
  • 6.97e3
68.83
  • 68.83
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
8.70e3
  • 8.70e3
61.12
  • 61.12
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
  • 1.74e4
53.03
  • 53.03
  • 22.09
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
  • 1.32e4
52.92
  • 52.92
  • 41.17
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
47.73
  • 47.73
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
46.82
  • 46.82
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
40.75
  • 40.75
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
40.05
  • 40.05
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
  • 1.97e4
38.80
  • 38.80
  • 12.03
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
38.00
  • 38.00
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
36.74
  • 36.74
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
36.01
  • 36.01
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.45e4
  • 1.45e4
35.12
  • 35.12
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
34.80
  • 34.80
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.58e4
33.94
  • 33.94
  • 29.18
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
32.35
  • 32.35
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.57e4
  • 2.00e4
29.74
  • 29.74
  • 29.64
  • 10.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
29.02
  • 29.02
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
28.69
  • 28.69
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
28.05
  • 28.05
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.65e4
  • 1.65e4
  • 2.00e4
26.18
  • 26.18
  • 10.64
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
25.61
  • 25.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000017955.

Cross-references

EnsemblENSCAFG00000017955 (RDH8)
HGNCHGNC:14423 (RDH8)
EMBLAAEX03012427
Uniprot/SPTREMBLE2RCG9, E2RCG9_CANLF

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