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C. lupus familiaris Gene: VBP1 - ENSCAFG00000019639 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000019639
NameVBP1
Descriptionvon Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12662]
OrganismCanis lupus familiaris (dog)
Synonym(s)pfd3, pfdn3
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
285
  • 285
  • 589
  • 865
98.73
  • 98.73
  • 97.37
  • 96.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
412
  • 412
  • 1.06e3
98.16
  • 98.16
  • 95.27
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
471
  • 471
97.90
  • 97.90
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
505
  • 505
97.75
  • 97.75
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
564
  • 564
97.48
  • 97.48
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
564
  • 564
  • 1.58e3
97.48
  • 97.48
  • 92.92
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
597
  • 597
  • 2.08e3
97.34
  • 97.34
  • 90.70
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
639
  • 639
  • 1.15e3
97.15
  • 97.15
  • 94.84
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
643
  • 643
97.13
  • 97.13
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
663
  • 663
  • 1.47e3
97.04
  • 97.04
  • 93.43
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
717
  • 717
  • 3.01e3
96.80
  • 96.80
  • 86.53
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
725
  • 725
  • 1.58e3
  • 2.56e3
96.76
  • 96.76
  • 92.94
  • 88.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
730
  • 730
96.74
  • 96.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
755
  • 755
96.63
  • 96.63
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
762
  • 762
  • 2.32e3
96.60
  • 96.60
  • 89.65
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
777
  • 777
  • 1.59e3
96.53
  • 96.53
  • 92.91
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
782
  • 782
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
819
  • 819
96.34
  • 96.34
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
824
  • 824
  • 5.23e3
96.32
  • 96.32
  • 76.62
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
855
  • 855
96.18
  • 96.18
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
862
  • 862
96.15
  • 96.15
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
933
  • 933
95.83
  • 95.83
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
938
  • 938
  • 1.66e3
95.81
  • 95.81
  • 92.60
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
957
  • 957
95.72
  • 95.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
960
  • 960
  • 1.15e3
  • 1.62e3
95.71
  • 95.71
  • 94.87
  • 92.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
962
  • 962
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
966
  • 966
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.01e3
  • 1.01e3
  • 1.75e3
95.48
  • 95.48
  • 92.20
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.03e3
  • 1.03e3
  • 2.31e3
95.42
  • 95.42
  • 89.66
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.06e3
  • 1.06e3
95.28
  • 95.28
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.10e3
  • 1.10e3
95.09
  • 95.09
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.13e3
  • 1.13e3
  • 1.35e3
94.95
  • 94.95
  • 93.97
AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.14e3
  • 1.14e3
94.91
  • 94.91
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.18e3
  • 1.18e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.25e3
  • 1.25e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.30e3
  • 1.30e3
94.21
  • 94.21
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.34e3
  • 1.34e3
94.03
  • 94.03
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.36e3
  • 1.36e3
93.90
  • 93.90
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.37e3
  • 1.37e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.40e3
  • 1.40e3
93.74
  • 93.74
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.44e3
  • 1.44e3
93.59
  • 93.59
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.45e3
  • 1.45e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.53e3
  • 1.53e3
  • 1.60e3
  • 2.23e3
  • 2.27e3
  • 2.46e3
93.17
  • 93.17
  • 92.83
  • 90.03
  • 89.87
  • 89.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
93.14
  • 93.14
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.63e3
  • 1.63e3
  • 2.12e3
92.74
  • 92.74
  • 90.55
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.01e3
  • 2.01e3
91.00
  • 91.00
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.08e3
  • 2.08e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
2.12e3
  • 2.12e3
90.52
  • 90.52
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.13e3
  • 2.13e3
90.48
  • 90.48
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
2.57e3
  • 2.57e3
88.53
  • 88.53
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
2.74e3
  • 2.74e3
87.76
  • 87.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
3.10e3
  • 3.10e3
86.15
  • 86.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000019639.

Cross-references

EnsemblENSCAFG00000019639 (VBP1)
HGNCHGNC:12662 (VBP1)
EMBLAAEX03027097
Uniprot/SPTREMBLF6XQ49, F6XQ49_CANLF

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