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C. lupus familiaris Gene: SLC8A1 - ENSCAFG00000023592 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000023592
NameSLC8A1
Descriptionsolute carrier family 8 (sodium/calcium exchanger), member 1 [Source:HGNC Symbol;Acc:HGNC:11068]
OrganismCanis lupus familiaris (dog)
Synonym(s)ncx1
Orthologs(s)23 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
301
  • 301
98.66
  • 98.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
668
  • 668
  • 2.73e3
97.02
  • 97.02
  • 87.81
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
845
  • 845
96.23
  • 96.23
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
928
  • 928
  • 1.23e3
95.85
  • 95.85
  • 94.52
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
929
  • 929
  • 2.85e3
95.85
  • 95.85
  • 87.26
AEIR
  • AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.01e3
  • 1.01e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.25e3
  • 1.25e3
94.43
  • 94.43
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
2.41e3
  • 2.41e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.98e3
  • 2.98e3
  • 4.68e3
86.66
  • 86.66
  • 79.07
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.06e3
  • 4.06e3
81.85
  • 81.85
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
4.30e3
  • 4.30e3
  • 7.89e3
80.77
  • 80.77
  • 64.73
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.62e3
  • 4.62e3
  • 8.62e3
79.36
  • 79.36
  • 61.47
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.99e3
  • 4.99e3
  • 9.11e3
77.70
  • 77.70
  • 59.26
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
5.02e3
  • 5.02e3
77.54
  • 77.54
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
5.03e3
  • 5.03e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
5.27e3
  • 5.27e3
76.43
  • 76.43
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
5.34e3
  • 5.34e3
  • 7.73e3
  • 8.39e3
76.14
  • 76.14
  • 65.42
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
5.48e3
  • 5.48e3
  • 1.16e4
75.48
  • 75.48
  • 48.01
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
5.91e3
  • 5.91e3
73.59
  • 73.59
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
6.01e3
  • 6.01e3
73.11
  • 73.11
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.31e3
  • 6.31e3
  • 9.13e3
71.77
  • 71.77
  • 59.18
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
6.62e3
  • 6.62e3
70.38
  • 70.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
6.70e3
  • 6.70e3
  • 6.77e3
  • 1.23e4
70.03
  • 70.03
  • 69.74
  • 44.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.96e3
  • 6.96e3
  • 9.18e3
68.90
  • 68.90
  • 58.94
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
7.04e3
  • 7.04e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
7.15e3
  • 7.15e3
68.02
  • 68.02
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
8.61e3
  • 8.61e3
61.50
  • 61.50
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
8.82e3
  • 8.82e3
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
9.26e3
  • 9.26e3
58.61
  • 58.61
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
9.31e3
  • 9.31e3
  • 1.13e4
58.36
  • 58.36
  • 49.69
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
9.46e3
  • 9.46e3
57.70
  • 57.70
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
9.53e3
  • 9.53e3
57.36
  • 57.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
9.54e3
  • 9.54e3
  • 1.03e4
  • 1.20e4
  • 1.32e4
  • 1.39e4
57.35
  • 57.35
  • 54.00
  • 46.42
  • 40.76
  • 37.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
9.58e3
  • 9.58e3
57.18
  • 57.18
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
9.73e3
  • 9.73e3
56.50
  • 56.50
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
9.94e3
  • 9.94e3
55.57
  • 55.57
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
9.99e3
  • 9.99e3
55.35
  • 55.35
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
1.00e4
  • 1.00e4
55.21
  • 55.21
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
53.44
  • 53.44
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
  • 1.08e4
53.06
  • 53.06
  • 51.53
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
50.36
  • 50.36
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.17e4
  • 1.17e4
  • 1.19e4
  • 1.25e4
47.49
  • 47.49
  • 46.66
  • 44.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.20e4
  • 1.20e4
  • 1.34e4
46.50
  • 46.50
  • 40.07
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
45.01
  • 45.01
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.27e4
43.62
  • 43.62
  • 43.37
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
39.90
  • 39.90
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
39.47
  • 39.47
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
37.88
  • 37.88
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
37.20
  • 37.20
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
1.51e4
  • 1.51e4
32.69
  • 32.69
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
32.32
  • 32.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
28.64
  • 28.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria22 species23 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000023592.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSCAFG00000023592.

Cross-references

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