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C. lupus familiaris Gene: ABCF1 - ENSCAFG00000030478 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000030478
NameABCF1
DescriptionATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70]
OrganismCanis lupus familiaris (dog)
Synonym(s)abc50, est123147
Orthologs(s)24 orthologs
Paralog(s)27 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
869
  • 869
  • 3.27e3
96.12
  • 96.12
  • 85.39
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.42e3
  • 1.42e3
  • 2.67e3
93.64
  • 93.64
  • 88.06
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.55e3
  • 1.55e3
93.08
  • 93.08
AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
1.86e3
  • 1.86e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.95e3
  • 1.95e3
  • 3.67e3
  • 3.71e3
91.30
  • 91.30
  • 83.57
  • 83.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.96e3
  • 1.96e3
91.25
  • 91.25
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
1.97e3
  • 1.97e3
  • 2.52e3
  • 2.74e3
91.19
  • 91.19
  • 88.73
  • 87.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.98e3
  • 1.98e3
  • 2.05e3
91.15
  • 91.15
  • 90.86
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.09e3
  • 2.09e3
  • 2.56e3
  • 3.03e3
  • 3.45e3
  • 3.46e3
90.65
  • 90.65
  • 88.56
  • 86.45
  • 84.58
  • 84.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
2.14e3
  • 2.14e3
90.45
  • 90.45
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.14e3
  • 2.14e3
  • 2.32e3
90.43
  • 90.43
  • 89.62
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
2.15e3
  • 2.15e3
90.39
  • 90.39
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.19e3
  • 2.19e3
  • 3.49e3
90.21
  • 90.21
  • 84.41
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
2.30e3
  • 2.30e3
89.71
  • 89.71
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.31e3
  • 2.31e3
  • 3.09e3
89.67
  • 89.67
  • 86.20
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
2.35e3
  • 2.35e3
  • 2.35e3
89.51
  • 89.51
  • 89.50
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
2.37e3
  • 2.37e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
2.41e3
  • 2.41e3
89.23
  • 89.23
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.42e3
  • 2.42e3
  • 2.52e3
89.17
  • 89.17
  • 88.75
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.44e3
  • 2.44e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.45e3
  • 2.45e3
  • 2.68e3
89.05
  • 89.05
  • 88.01
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
2.46e3
  • 2.46e3
89.03
  • 89.03
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.49e3
  • 2.49e3
  • 2.59e3
88.86
  • 88.86
  • 88.44
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.50e3
  • 2.50e3
  • 3.11e3
88.83
  • 88.83
  • 86.11
AEIR
  • AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
2.53e3
  • 2.53e3
88.69
  • 88.69
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.53e3
  • 2.53e3
  • 3.37e3
88.68
  • 88.68
  • 84.92
AEIR
  • AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
2.56e3
  • 2.56e3
88.56
  • 88.56
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
2.57e3
  • 2.57e3
88.53
  • 88.53
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
2.67e3
  • 2.67e3
  • 3.00e3
88.06
  • 88.06
  • 86.58
AEIR
  • AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
2.68e3
  • 2.68e3
  • 3.49e3
88.02
  • 88.02
  • 84.41
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.74e3
  • 2.74e3
  • 3.33e3
87.74
  • 87.74
  • 85.13
AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
2.83e3
  • 2.83e3
87.34
  • 87.34
AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
87.21
  • 87.21
AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
2.86e3
  • 2.86e3
87.20
  • 87.20
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.88e3
  • 2.88e3
87.15
  • 87.15
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
2.90e3
  • 2.90e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
3.00e3
  • 3.00e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
3.02e3
  • 3.02e3
  • 3.26e3
  • 3.90e3
86.49
  • 86.49
  • 85.43
  • 82.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
3.06e3
  • 3.06e3
86.33
  • 86.33
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
3.08e3
  • 3.08e3
86.23
  • 86.23
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
3.10e3
  • 3.10e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
3.14e3
  • 3.14e3
85.98
  • 85.98
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
3.28e3
  • 3.28e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
3.34e3
  • 3.34e3
85.05
  • 85.05
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
3.37e3
  • 3.37e3
84.93
  • 84.93
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
3.45e3
  • 3.45e3
84.56
  • 84.56
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
3.46e3
  • 3.46e3
84.52
  • 84.52
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
3.51e3
  • 3.51e3
84.31
  • 84.31
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
3.58e3
  • 3.58e3
84.00
  • 84.00
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
3.63e3
  • 3.63e3
83.77
  • 83.77
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
3.79e3
  • 3.79e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
3.90e3
  • 3.90e3
82.59
  • 82.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
6.31e3
  • 6.31e3
71.79
  • 71.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000030478.

Paralogs (same species)

Cross-references

EnsemblENSCAFG00000030478 (ABCF1)
HGNCHGNC:70 (ABCF1)
EMBLAAEX03008197
Uniprot/SPTREMBLE2R3F9, E2R3F9_CANLF, J9NXH0, J9NXH0_CANLF

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