C. lupus familiaris Gene: COL10A1 - ENSCAFG00000030721 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000030721
NameCOL10A1
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismCanis lupus familiaris (dog)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
139
  • 139
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.86e3
  • 2.86e3
  • 1.03e4
  • 1.24e4
  • 1.29e4
  • 1.54e4
87.21
  • 87.21
  • 53.83
  • 44.36
  • 42.10
  • 31.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007222late adult stage
9.96e3
  • 9.96e3
  • 1.27e4
  • 1.37e4
55.48
  • 55.48
  • 43.03
  • 38.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
  • 1.59e4
39.74
  • 39.74
  • 28.96
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
36.41
  • 36.41
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.51e4
35.96
  • 35.96
  • 32.31
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
31.40
  • 31.40
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.70e4
  • 1.70e4
23.82
  • 23.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000030721.

Cross-references

EnsemblENSCAFG00000030721 (COL10A1)
HGNCHGNC:2185 (COL10A1)
EMBLAAEX03008648
Uniprot/SPTREMBLJ9P1I7, J9P1I7_CANLF

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