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C. porcellus Gene: TOPBP1 - ENSCPOG00000000921 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000000921
NameTOPBP1
Descriptiontopoisomerase (DNA) II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]
OrganismCavia porcellus (guinea pig)
Synonym(s)kiaa0259, top2bp1
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
3.14e3
  • 3.14e3
84.00
  • 84.00
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
4.67e3
  • 4.67e3
  • 4.86e3
76.20
  • 76.20
  • 75.27
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
4.85e3
  • 4.85e3
75.31
  • 75.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
6.08e3
  • 6.08e3
69.02
  • 69.02
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
6.53e3
  • 6.53e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
6.96e3
  • 6.96e3
64.54
  • 64.54
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
6.99e3
  • 6.99e3
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
7.20e3
  • 7.20e3
63.31
  • 63.31
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.25e3
  • 7.25e3
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
7.61e3
  • 7.61e3
61.23
  • 61.23
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.63e3
  • 7.63e3
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.80e3
  • 7.80e3
60.27
  • 60.27
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
8.30e3
  • 8.30e3
57.74
  • 57.74
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
8.43e3
  • 8.43e3
57.05
  • 57.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000000921.

Cross-references

EnsemblENSCPOG00000000921 (TOPBP1)
HGNCHGNC:17008 (TOPBP1)
EMBLAAKN02013034, AAKN02013035
Uniprot/SPTREMBLH0UV15, H0UV15_CAVPO

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