C. porcellus Gene: T - ENSCPOG00000001358 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000001358
NameT
DescriptionT brachyury transcription factor [Source:HGNC Symbol;Acc:HGNC:11515]
OrganismCavia porcellus (guinea pig)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
39.74
  • 39.74
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
36.16
  • 36.16
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
32.82
  • 32.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
32.09
  • 32.09
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
30.83
  • 30.83
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
22.46
  • 22.46
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
22.19
  • 22.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000001358.

Cross-references

EnsemblENSCPOG00000001358 (T)
HGNCHGNC:11515 (T)
EMBLAAKN02044111
Uniprot/SPTREMBLH0UW13, H0UW13_CAVPO

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