C. porcellus Gene: SPTLC2 - ENSCPOG00000001497 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000001497
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismCavia porcellus (guinea pig)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a
Orthologs(s)27 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
5.02e3
  • 5.02e3
74.43
  • 74.43
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
5.05e3
  • 5.05e3
  • 5.73e3
74.30
  • 74.30
  • 70.83
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
6.98e3
  • 6.98e3
64.47
  • 64.47
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.78e3
  • 7.78e3
60.40
  • 60.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
59.75
  • 59.75
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
8.44e3
  • 8.44e3
57.01
  • 57.01
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
9.00e3
  • 9.00e3
54.17
  • 54.17
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.06e3
  • 9.06e3
53.86
  • 53.86
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
9.30e3
  • 9.30e3
52.65
  • 52.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
9.30e3
  • 9.30e3
52.61
  • 52.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
9.61e3
  • 9.61e3
51.07
  • 51.07
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
50.95
  • 50.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
9.86e3
  • 9.86e3
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
45.34
  • 45.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
44.97
  • 44.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000001497.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSCPOG00000001497.

Cross-references

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