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C. porcellus Gene: ATG4C - ENSCPOG00000001607 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000001607
NameATG4C
Descriptionautophagy related 4C, cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16040]
OrganismCavia porcellus (guinea pig)
Synonym(s)apg4c, autl1, autl3, flj14867
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
3.09e3
  • 3.09e3
84.26
  • 84.26
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
5.99e3
  • 5.99e3
69.49
  • 69.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.27e3
  • 6.27e3
68.07
  • 68.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
6.58e3
  • 6.58e3
66.49
  • 66.49
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
6.74e3
  • 6.74e3
65.68
  • 65.68
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
6.88e3
  • 6.88e3
64.95
  • 64.95
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
6.92e3
  • 6.92e3
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
7.06e3
  • 7.06e3
64.03
  • 64.03
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
7.17e3
  • 7.17e3
63.50
  • 63.50
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
7.48e3
  • 7.48e3
61.92
  • 61.92
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000068embryo stage
7.63e3
  • 7.63e3
  • 7.67e3
61.14
  • 61.14
  • 60.92
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
59.74
  • 59.74
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
8.06e3
  • 8.06e3
58.94
  • 58.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000001607.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSCPOG00000001607.

Cross-references

EnsemblENSCPOG00000001607 (ATG4C)
HGNCHGNC:16040 (ATG4C)
EMBLAAKN02005156
Uniprot/SPTREMBLH0UWL1, H0UWL1_CAVPO

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