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C. porcellus Gene: SLC18A1 - ENSCPOG00000001743 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000001743
NameSLC18A1
Descriptionsolute carrier family 18 (vesicular monoamine transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10934]
OrganismCavia porcellus (guinea pig)
Synonym(s)cgat, vat1, vmat1
Orthologs(s)26 orthologs
Paralog(s)26 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
7.58e3
  • 7.58e3
61.38
  • 61.38
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
8.90e3
  • 8.90e3
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
41.95
  • 41.95
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
36.14
  • 36.14
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
31.62
  • 31.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria23 species26 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000001743.

Paralogs (same species)

Cross-references

EnsemblENSCPOG00000001743 (SLC18A1)
HGNCHGNC:10934 (SLC18A1)
EMBLAAKN02003219
Uniprot/SPTREMBLH0UWX5, H0UWX5_CAVPO

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