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C. porcellus Gene: VPS16 - ENSCPOG00000003602 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000003602
NameVPS16
DescriptionVPS16, CORVET/HOPS core subunit [Source:HGNC Symbol;Acc:HGNC:14584]
OrganismCavia porcellus (guinea pig)
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
2.05e3
  • 2.05e3
89.56
  • 89.56
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.14e3
  • 2.14e3
89.11
  • 89.11
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
2.82e3
  • 2.82e3
85.62
  • 85.62
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
2.85e3
  • 2.85e3
85.47
  • 85.47
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
3.11e3
  • 3.11e3
84.14
  • 84.14
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
3.19e3
  • 3.19e3
83.77
  • 83.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
3.32e3
  • 3.32e3
83.11
  • 83.11
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
3.41e3
  • 3.41e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
3.61e3
  • 3.61e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
4.35e3
  • 4.35e3
77.87
  • 77.87
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
4.39e3
  • 4.39e3
77.65
  • 77.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
4.51e3
  • 4.51e3
77.01
  • 77.01
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
5.00e3
  • 5.00e3
74.54
  • 74.54
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000068embryo stage
5.36e3
  • 5.36e3
  • 5.67e3
72.69
  • 72.69
  • 71.12
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000003602.

Cross-references

EnsemblENSCPOG00000003602 (VPS16)
HGNCHGNC:14584 (VPS16)
EMBLAAKN02012838
Uniprot/SPTREMBLH0V193, H0V193_CAVPO

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