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C. porcellus Gene: SCN3A - ENSCPOG00000004367 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000004367
NameSCN3A
Descriptionsodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
OrganismCavia porcellus (guinea pig)
Synonym(s)nav1.3
Orthologs(s)23 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.33e3
  • 8.33e3
57.59
  • 57.59
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
8.83e3
  • 8.83e3
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.41e3
  • 9.41e3
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
9.91e3
  • 9.91e3
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
30.58
  • 30.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
28.82
  • 28.82
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
28.66
  • 28.66
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
27.82
  • 27.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000004367.

Paralogs (same species)

Cross-references

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